Total Synthesis of Glycosylated Interleukin-25 Via Integrated Chemical Ligations

Total Synthesis of Glycosylated Interleukin-25 Via Integrated Chemical Ligations
Author: Chi-Lung Lee
Publisher:
Total Pages:
Release: 2017-01-26
Genre:
ISBN: 9781361042403

Download Total Synthesis of Glycosylated Interleukin-25 Via Integrated Chemical Ligations Book in PDF, Epub and Kindle

This dissertation, "Total Synthesis of Glycosylated Interleukin-25 via Integrated Chemical Ligations" by Chi-lung, Lee, 李志龍, was obtained from The University of Hong Kong (Pokfulam, Hong Kong) and is being sold pursuant to Creative Commons: Attribution 3.0 Hong Kong License. The content of this dissertation has not been altered in any way. We have altered the formatting in order to facilitate the ease of printing and reading of the dissertation. All rights not granted by the above license are retained by the author. Abstract: Abstract of thesis entitled TOTAL SYNTHESIS OF GLYCOSYLATED INTERLEUKIN-25 VIA INTEGRATED CHEMICAL LIGATIONS Submitted by Chi Lung LEE for the degree of Doctor of Philosophy at The University of Hong Kong in April 2016 Chemical protein synthesis is a powerful tool as it can exert atomically precise control on the composition of protein and, thus, can overcome the potential limitations of protein expression. It enables the assembly of complex and homogeneous proteins bearing site-specific post-translational modifications, such as glycosylation, for the study of structure-activity-relationship (SAR) of proteins. To maximize the efficiency of protein synthesis, a convergent synthetic approach is adopted as this involves ligations in both the N-to-C and C-to-N direction which are inherently parallel and complementary. To this end, kinetically controlled ligation (KCL) was developed. However, for the synthesis involving multi-fragments ligation using serine/threonine ligation (STL), current strategies are suitable only for the sequential ligations in the C-to-N direction. In this thesis, a novel N-to-C assembly strategy has been developed for STL-based convergent ii synthesis of protein/glycoprotein. The key to the success in STL in the N-to-C direction was the use of semicarbazone as a protecting group to selectively switch on/off on and off the activity of the peptide salicylaldehyde (SAL ) ester, permitting the control of the dual activity of peptide containing N-terminal Ser/Thr and C- terminal SAL ester. By combining this strategy with traditional C-to-N STL, convergent synthesis by STL is now realized. In addition to STL, a combined ligation strategy involving sequential STL and NCL was also revealed in the N- to-C direction. This new strategy could significantly increase the choices for ligation sites and thus allow the assembly of protein targets bearing insufficient cysteines or cysteines next to proline or valine. The feasibility of the N-to-C assembly using an integrated ligation strategy to produce peptide fragments for convergent synthesis was demonstrated by the synthesis of an N-glycosylated protein Interleukin (IL)-25 (also known as IL-17E), where its aggregation-prone nature at its C-terminal end renders its synthesis difficult via traditional C-to-N STL. With this successful illustration, it is anticipated that the compatibility of STL and NCL will provide a versatile approach for the future convergent synthesis of proteins of many kinds. iii Subjects: Interleukins

Total Synthesis of Glycosylated Interleukin-25 Via Integrated Chemical Ligations

Total Synthesis of Glycosylated Interleukin-25 Via Integrated Chemical Ligations
Author: Chi-Lung Lee
Publisher: Open Dissertation Press
Total Pages: 296
Release: 2017-01-26
Genre: Interleukins
ISBN: 9781361042397

Download Total Synthesis of Glycosylated Interleukin-25 Via Integrated Chemical Ligations Book in PDF, Epub and Kindle

This dissertation, "Total Synthesis of Glycosylated Interleukin-25 via Integrated Chemical Ligations" by Chi-lung, Lee, 李志龍, was obtained from The University of Hong Kong (Pokfulam, Hong Kong) and is being sold pursuant to Creative Commons: Attribution 3.0 Hong Kong License. The content of this dissertation has not been altered in any way. We have altered the formatting in order to facilitate the ease of printing and reading of the dissertation. All rights not granted by the above license are retained by the author. Abstract: Abstract of thesis entitled TOTAL SYNTHESIS OF GLYCOSYLATED INTERLEUKIN-25 VIA INTEGRATED CHEMICAL LIGATIONS Submitted by Chi Lung LEE for the degree of Doctor of Philosophy at The University of Hong Kong in April 2016 Chemical protein synthesis is a powerful tool as it can exert atomically precise control on the composition of protein and, thus, can overcome the potential limitations of protein expression. It enables the assembly of complex and homogeneous proteins bearing site-specific post-translational modifications, such as glycosylation, for the study of structure-activity-relationship (SAR) of proteins. To maximize the efficiency of protein synthesis, a convergent synthetic approach is adopted as this involves ligations in both the N-to-C and C-to-N direction which are inherently parallel and complementary. To this end, kinetically controlled ligation (KCL) was developed. However, for the synthesis involving multi-fragments ligation using serine/threonine ligation (STL), current strategies are suitable only for the sequential ligations in the C-to-N direction. In this thesis, a novel N-to-C assembly strategy has been developed for STL-based convergent ii synthesis of protein/glycoprotein. The key to the success in STL in the N-to-C direction was the use of semicarbazone as a protecting group to selectively switch on/off on and off the activity of the peptide salicylaldehyde (SAL ) ester, permitting the control of the dual activity of peptide containing N-terminal Ser/Thr and C- terminal SAL ester. By combining this strategy with traditional C-to-N STL, convergent synthesis by STL is now realized. In addition to STL, a combined ligation strategy involving sequential STL and NCL was also revealed in the N- to-C direction. This new strategy could significantly increase the choices for ligation sites and thus allow the assembly of protein targets bearing insufficient cysteines or cysteines next to proline or valine. The feasibility of the N-to-C assembly using an integrated ligation strategy to produce peptide fragments for convergent synthesis was demonstrated by the synthesis of an N-glycosylated protein Interleukin (IL)-25 (also known as IL-17E), where its aggregation-prone nature at its C-terminal end renders its synthesis difficult via traditional C-to-N STL. With this successful illustration, it is anticipated that the compatibility of STL and NCL will provide a versatile approach for the future convergent synthesis of proteins of many kinds. iii Subjects: Interleukins

Total Chemical Synthesis of Proteins

Total Chemical Synthesis of Proteins
Author: Ashraf Brik
Publisher: John Wiley & Sons
Total Pages: 626
Release: 2021-06-08
Genre: Science
ISBN: 3527346600

Download Total Chemical Synthesis of Proteins Book in PDF, Epub and Kindle

How to synthesize native and modified proteins in the test tube With contributions from a panel of experts representing a range of disciplines, Total Chemical Synthesis of Proteins presents a carefully curated collection of synthetic approaches and strategies for the total synthesis of native and modified proteins. Comprehensive in scope, this important reference explores the three main chemoselective ligation methods for assembling unprotected peptide segments, including native chemical ligation (NCL). It includes information on synthetic strategies for the complex polypeptides that constitute glycoproteins, sulfoproteins, and membrane proteins, as well as their characterization. In addition, important areas of application for total protein synthesis are detailed, such as protein crystallography, protein engineering, and biomedical research. The authors also discuss the synthetic challenges that remain to be addressed. This unmatched resource: Contains valuable insights from the pioneers in the field of chemical protein synthesis Presents proven synthetic approaches for a range of protein families Explores key applications of precisely controlled protein synthesis, including novel diagnostics and therapeutics Written for organic chemists, biochemists, biotechnologists, and molecular biologists, Total Chemical Synthesis of Proteins provides key knowledge for everyone venturing into the burgeoning field of protein design and synthetic biology.

Protein Chemistry

Protein Chemistry
Author: Nigel Stokes
Publisher:
Total Pages: 223
Release: 2018-05-21
Genre: Science
ISBN: 9781682865965

Download Protein Chemistry Book in PDF, Epub and Kindle

Proteins are organic compounds which are formed of amino acids that are linked together by peptides. They help the body in getting nitrogen, vitamins and sulfur. Proteins are three dimensional in their structure. Their structure can be categorized into four distinctive aspects - primary structure, secondary structure, quaternary structure and tertiary structure. As this subject is emerging at a rapid pace, the contents of this book will help the readers understand the modern concepts and applications of the subject. This book is meant for students who are looking for an elaborate reference text on protein chemistry.

Split Inteins

Split Inteins
Author: Henning D. Mootz
Publisher: Humana
Total Pages: 0
Release: 2016-10-07
Genre: Science
ISBN: 9781493964499

Download Split Inteins Book in PDF, Epub and Kindle

This volume focuses on applications of split inteins, and the progress that has been made in the past 5 years on discovery and engineering of fast and more efficient split inteins. The first few chapters in Split Inteins: Methods and Protocols explore new techniques on how to use split inteins for affinity purification of overproduced proteins, and split-intein based technologies to prepare cyclic peptides and proteins. The next few chapters discuss semisynthetic protein trans-splicing using one synthetic intein piece, synthetic intein-extein pieces used to deliver other cargos for chemical modification both of purified proteins and of proteins in living cells, as well as isotopic labeling of proteins for NMR studies, and a discussion on how protein block copolymers can be generated by protein trans-splicing to form protein hydrogels. The last few chapters deal with intein applications in transgenic plants and conditional inteins that can be regulated in artificial ways by small molecules or light, a cassette-based approach to quickly test many intein insertion positions, and a computational approach to predict new intein split sites (the approach also works for other proteins). Written in the highly successful Methods in Molecular Biology series format, chapters include introduction to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and thorough, Split Inteins: Methods and Protocols is a valuable resource that will provide guidance toward possibilities of split intein applications, explore proven and detailed protocols adaptable to various research projects, and inspire new method developments.

Expressed Protein Ligation

Expressed Protein Ligation
Author: Miquel Vila-Perelló
Publisher: Humana
Total Pages: 0
Release: 2020-03-07
Genre: Science
ISBN: 9781071604335

Download Expressed Protein Ligation Book in PDF, Epub and Kindle

This book provides a comprehensive overview of Expressed Protein Ligation (EPL), detailing methods and protocols to generate site-specifically modified proteins. Chapters include an overview of the protein semi-synthesis field, as well as related areas that have contributed to the development of EPL such as protein splicing and peptide synthesis. Following the introductory chapters, the rest of the book guides readers through protocols to perform EPL reactions, methods to synthesize peptide thioesters and to perform peptide and protein ligations, label proteins inside living cells, protocols for the semi-synthesis of phorphorylated, glycosylated and ubiquitylated proteins, synthesis and assembly of assymetrically modified nucleosomes, use of ligation auxiliaries and synthesis of cyclic proteins, as well as novel desulfurization strategies and use of selective Cys side chain protection to obtain precisely modified proteins.Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Expressed Protein Ligation: Methods and Protocols will ensure successful implementation of protein semi-synthesis methods to further study the structure and function of proteins.

Bioconjugate Techniques

Bioconjugate Techniques
Author: Greg T. Hermanson
Publisher: Academic Press
Total Pages: 1233
Release: 2010-07-26
Genre: Science
ISBN: 0080568726

Download Bioconjugate Techniques Book in PDF, Epub and Kindle

Bioconjugate Techniques, 2nd Edition, is the essential guide to the modification and cross linking of biomolecules for use in research, diagnostics, and therapeutics. It provides highly detailed information on the chemistry, reagent systems, and practical applications for creating labeled or conjugate molecules. It also describes dozens of reactions with details on hundreds of commercially available reagents and the use of these reagents for modifying or cross linking peptides and proteins, sugars and polysaccharides, nucleic acids and oligonucleotides, lipids, and synthetic polymers. A one-stop source for proven methods and protocols for synthesizing bioconjugates in the lab Step-by-step presentation makes the book an ideal source for researchers who are less familiar with the synthesis of bioconjugates More than 600 figures that visually describe the complex reactions associated with the synthesis of bioconjugates Includes entirely new chapters on the latest areas in the field of bioconjugation as follows: Microparticles and nanoparticlesSilane coupling agentsDendrimers and dendronsChemoselective ligationQuantum dotsLanthanide chelatesCyanine dyesDiscrete PEG compoundsBuckyballs,fullerenes, and carbon nanotubesMass tags and isotope tagsBioconjugation in the study of protein interactions

Cumulated Index Medicus

Cumulated Index Medicus
Author:
Publisher:
Total Pages: 1400
Release: 1989
Genre: Medicine
ISBN:

Download Cumulated Index Medicus Book in PDF, Epub and Kindle

Synthesis and Characterization of Glycosides

Synthesis and Characterization of Glycosides
Author: Marco Brito-Arias
Publisher: Springer Nature
Total Pages: 543
Release: 2022-04-22
Genre: Science
ISBN: 3030978540

Download Synthesis and Characterization of Glycosides Book in PDF, Epub and Kindle

This third edition is a comprehensive and extended study about the best known approaches for preparing the main types of glycosides, covering the classic and more recent glycosylation reactions used for preparing simple and challenging glycosides currently used as potent antiviral and antineoplastic drugs, or fluorogenic substrates used for enzymatic detection in cell biology. Besides, this new edition provides more examples of the glycosidic methodologies followed for preparing complex glycoconjugates such as glycoproteins and glycosphingolipids and gangliosides used as adjuvants or as synthetic vaccines candidates. Also, additional mechanistic evidence is presented for better understanding of the glycosylation reaction, trying to identify the variables mainly depending on protecting and leaving groups, as well as catalyst and reaction condition which altogether directs the anomeric stereo control. A chapter on the glycoside hydrolysis is included in view of the increasing interest in the use of biomass as a natural and renewable source for obtaining important intermediates or products used in food or valuable materials. The author includes information in the characterization of glycosides section with the aim of giving additional tools for the structural assignment through NMR, X-Ray and mass spectra techniques.

Concepts and Techniques in Genomics and Proteomics

Concepts and Techniques in Genomics and Proteomics
Author: N Saraswathy
Publisher: Elsevier
Total Pages: 271
Release: 2011-07-01
Genre: Science
ISBN: 1908818050

Download Concepts and Techniques in Genomics and Proteomics Book in PDF, Epub and Kindle

Concepts and techniques in genomics and proteomics covers the important concepts of high-throughput modern techniques used in the genomics and proteomics field. Each technique is explained with its underlying concepts, and simple line diagrams and flow charts are included to aid understanding and memory. A summary of key points precedes each chapter within the book, followed by detailed description in the subsections. Each subsection concludes with suggested relevant original references. Provides definitions for key concepts Case studies are included to illustrate ideas Important points to remember are noted