The Discovery and Characterization of Transposable Elements

The Discovery and Characterization of Transposable Elements
Author: Barbara McClintock
Publisher: Routledge
Total Pages: 635
Release: 1987
Genre: Religion
ISBN: 9780824013912

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The introduction was written by Barbara McClintock to show how the concept of transposable elements evolved, and to comment on subsequent investigations of these elements. The papers in this volume were selected because of their relevance to this topic. For the discovery of "Mobile genetic elements" she received the Nobel Prize for Physiology or Medicine in 1983.

Handbook of Maize

Handbook of Maize
Author: Jeff L. Bennetzen
Publisher: Springer Science & Business Media
Total Pages: 785
Release: 2009-01-16
Genre: Technology & Engineering
ISBN: 0387778632

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Maize is one of the world’s highest value crops, with a multibillion dollar annual contribution to agriculture. The great adaptability and high yields available for maize as a food, feed and forage crop have led to its current production on over 140 million hectares worldwide, with acreage continuing to grow at the expense of other crops. In terms of tons of cereal grain produced worldwide, maize has been number one for many years. Moreover, maize is expanding its contribution to non-food uses, including as a major source of ethanol as a fuel additive or fuel alternative in the US. In addition, maize has been at the center of the transgenic plant controversy, serving as the first food crop with released transgenic varieties. By 2008, maize will have its genome sequence released, providing the sequence of the first average-size plant genome (the four plant genomes that are now sequenced come from unusually tiny genomes) and of the most complex genome sequenced from any organism. Among plant science researchers, maize has the second largest and most productive research community, trailing only the Arabidopsis community in scale and significance. At the applied research and commercial improvement levels, maize has no peers in agriculture, and consists of thousands of contributors worthwhile. A comprehensive book on the biology of maize has not been published. The "Handbook of Maize: the Genetics and Genomics" center on the past, present and future of maize as a model for plant science research and crop improvement. The books include brief, focused chapters from the foremost maize experts and feature a succinct collection of informative images representing the maize germplasm collection.

The Maize Genome

The Maize Genome
Author: Jeffrey Bennetzen
Publisher: Springer
Total Pages: 390
Release: 2018-11-24
Genre: Science
ISBN: 3319974270

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This book discusses advances in our understanding of the structure and function of the maize genome since publication of the original B73 reference genome in 2009, and the progress in translating this knowledge into basic biology and trait improvement. Maize is an extremely important crop, providing a large proportion of the world’s human caloric intake and animal feed, and serving as a model species for basic and applied research. The exceptionally high level of genetic diversity within maize presents opportunities and challenges in all aspects of maize genetics, from sequencing and genotyping to linking genotypes to phenotypes. Topics covered in this timely book range from (i) genome sequencing and genotyping techniques, (ii) genome features such as centromeres and epigenetic regulation, (iii) tools and resources available for trait genomics, to (iv) applications of allele mining and genomics-assisted breeding. This book is a valuable resource for researchers and students interested in maize genetics and genomics.

Plant Transposable Elements

Plant Transposable Elements
Author: Deepu Pandita
Publisher: CRC Press
Total Pages: 376
Release: 2023-06-30
Genre: Science
ISBN: 1000638758

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This new volume provides an up-to-date understanding of the numerous classes of plant transposable elements, the mobile units of DNA that comprise large portions of plant genomes, which are an important contributor for gene and genome evolution. Transposable elements (TEs) are major components of large plant genomes and main drivers of genome evolution, known to produce a wide variety of changes in plant gene expression and function. Providing a systematic interpretation of protocols designed to characterize TEs and their biotechnological roles, the volume explores TEs in plant development, their architecture, their epigenetic regulation, their use in DNA repair, their evolution and speciation, while also highlighting their importance in the approaching epoch of climate change. The volume begins with introduction of transposable elements, covering their classification and transposition. It delves into protocols designed to characterize TEs and their biotechnological applications. The book includes computational approaches for prediction and analysis, retro-transposon capture sequencing, and more. The section on transposon biology focuses on its role in plant development and as natural genetic engineers of genome mutation, evolution, and speciation. The book looks further into transposon applications in genome editing, exploring tagging and mutagenesis, genome engineering, and more.

Transposable Elements and Genome Evolution

Transposable Elements and Genome Evolution
Author: Aurélie Hua-Van
Publisher: John Wiley & Sons
Total Pages: 271
Release: 2024-08-15
Genre: Science
ISBN: 1394312458

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Since their discovery by Barbara McClintock in the mid-20th century, the importance of transposable elements in shaping the architecture, function and evolution of genomes has gradually been unveiled. These DNA sequences populate nearly all genomes and are viewed as genomic parasites. They are mobile, capable of proliferating within genomes and also commonly travel between species. These elements are mutagenic and are responsible for several human genetic disorders, but they also constitute a major source of genetic diversity. Some insertions have beneficial effects for the host and are selected for, giving rise to significant evolutionary innovations. Their dynamics within genomes are intricate, as are their interactions with other genome components. To limit their proliferation, the genome has evolved sophisticated defense mechanisms. While researchers commonly use these elements as genetic tools, their identification in newly sequenced genomes remains a challenge due not only to their extensive diversity, but also their large copy numbers.

Classic Papers

Classic Papers
Author:
Publisher: Elsevier
Total Pages: 551
Release: 1997-06-20
Genre: Science
ISBN: 0080561810

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Articles in this Classic Papers volume are rewritten, up-dated and extended versions of papers published in previous volumes of Advances in Botanical Research, chosen because of the high citation of the original papers and the increase of knowledge in the field today.Boulter and Croy discuss the structure and biosynthesis of legume seed storage proteins, an area that has been revolutionized in recent years by advances in 3-D structural analysis and methods of gene manipulation.Raven writes about the significant progress made in our understanding of the biochemistry of inorganic carbon acquisition by marine autotrophs, and places this new information in evolutionary and biogeochemical contexts. Advances in biochemistry have also made impact on research into cyanotixons. Carmichael considers the expansion of cyanotoxin research in the light of the negative impact of these toxins on water quality and aquaculture industries.The structure and regulation of algal photosystems are discussed by Larkum and Howe. They write about the diversity of algal photochemical apparatus and light-harvesting strategy, which has only been appreciated with the use of molecular genetic approaches. Finally, Kunze, Saedler and Loonig review advances in the field of plant transposable elements and the mechanism of transposition. They cover the role of transposable elements in evolution and their use as molecular tools, the importance of which has only speculated on in the original paper in 1986.

Mobile DNA III

Mobile DNA III
Author: Michael Chandler
Publisher: John Wiley & Sons
Total Pages: 1321
Release: 2020-07-24
Genre: Science
ISBN: 1555819214

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An exploration of the raw power of genetic material to refashion itself to any purpose... Virtually all organisms contain multiple mobile DNAs that can move from place to place, and in some organisms, mobile DNA elements make up a significant portion of the genome. Mobile DNA III provides a comprehensive review of recent research, including findings suggesting the important role that mobile elements play in genome evolution and stability. Editor-in-Chief Nancy L. Craig assembled a team of multidisciplinary experts to develop this cutting-edge resource that covers the specific molecular mechanisms involved in recombination, including a detailed structural analysis of the enzymes responsible presents a detailed account of the many different recombination systems that can rearrange genomes examines the tremendous impact of mobile DNA in virtually all organisms Mobile DNA III is valuable as an in-depth supplemental reading for upper level life sciences students and as a reference for investigators exploring new biological systems. Biomedical researchers will find documentation of recent advances in understanding immune-antigen conflict between host and pathogen. It introduces biotechnicians to amazing tools for in vivo control of designer DNAs. It allows specialists to pick and choose advanced reviews of specific elements and to be drawn in by unexpected parallels and contrasts among the elements in diverse organisms. Mobile DNA III provides the most lucid reviews of these complex topics available anywhere.

Evolution and Impact of Transposable Elements

Evolution and Impact of Transposable Elements
Author: Pierre Capy
Publisher: Springer Science & Business Media
Total Pages: 305
Release: 2012-12-06
Genre: Science
ISBN: 9401148988

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During the last 50 years, the perception oftransposable elements (TEs) has changed considerably from selfish DNA to sequences that may contribute significantly to genome function and evolution. The recent increased interest in TEs is based on the realization that they are a major genetic component (at least 10--20%) of all organisms and a major contributor to the mutation process. It is currently estimated that 70--80% of spontaneous mutations are the result of TE-mediated insertions, deletions, or chromosomal rearrangements. Thus, it seems at least plausible that TEs may playa significant role in the adaptation and evolution of natural populations and species. The ubiquity of TEs suggests that they are an old component of genomes which have been vertically transmitted through generations over evolutionary time. However, detailed analyses carried out over the last 20 years have revealed several unusual features of TE evolution: (i) TEs can be horizontally transferred between species; (ii) TE evolutionary rates can be dramatically increased by specific inactivation processes, such as the RIP (Repeat Induced Point mutation) mechanism in fungi; (iii) TEs can influence the regulation of other TEs by insertion or deletion; (iv) different classes of TEs in even distantly related species can be remarkably similar in both structure and function.

Transposable Elements

Transposable Elements
Author: Heinz Saedler
Publisher: Springer Science & Business Media
Total Pages: 242
Release: 2012-12-06
Genre: Science
ISBN: 3642797954

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Most genes are lined up on chromosomes like pearls on a string. However, a certain class of genes differ by being highly mobile; and the mecha they are termed transposons. Their properties of transposition will be described in this book. nism is the rule, irregularities like a spot on a Where uniformity plain-coloured surface strike the eye. Thus the phenomenon of has long been a source of fascina variegation among organisms In plants, variegation is most easily recognised as irregulari tion. in pigment patterns on leaves, flowers and seeds, but other ties as leaf or flower form might also show characteristics such In 1588, such a variegation pattern was described in variegation. kernels of Zea mays by Jacob Theodor of Bergzabern, a village is so detailed that if south of Strasbourg. The report by Theodor one counts the different kernel phenotypes described it be is looking at a Mendelian segrega comes clear that the author had tion. It goes without saying that Latin-American Indians already bred such variegated material much earlier, but no descriptions have yet been uncovered. Meanwhile, genetically heritable variegation patterns have been described at many different loci in more than 34 different plant species.