The BaBar experiment at the PEP-II B-factory gives excellent opportunities for the quarkonium spectroscopy. Investigation of the properties of new states like the X(3872), Y(3940) and Y(4260) are performed aiming to understand their nature. Recent BaBar results will be presented in this paper. At the B-factories charmonium and charmonium-like states are copiously produced via several mechanisms: in B decay (color suppressed b 2!c transition), double charmonium production (ee− 2!c{bar c} + c{bar c}), two photons production ([gamma]*[gamma]* 2!c{bar c}, where the c{bar c} state has positive C-parity) and in initial state radiation (ISR) when the e{sup {+-}} in its initial state emits a photon lowering the effective center of mass energy of the ee− interaction (e+e− 2![gamma]{sub ISR} + c{bar c}, where the charmonium state has the quantum numbers J{sup PC} = 1−2). Many new states have been recently discovered at the B-factories, BaBar and Belle, above the D{bar D} threshold in the charmonium energy region. While some of them appear to be consistent with conventional c{sub c} states others do not fit with any expectation. Several interpretations for these states have been proposed: for some of them the mass values suggest that they could be conventional charmonia, but also other interpretations like D°{bar D}*° molecule or diquark-antidiquark states among many other models have been advanced. Reviews can be found in Refs. [1][2]. In all cases the picture is not completely clear. This situation could be remedied by a coherent search of the decay pattern to D{bar D}, search for production in two-photon fusion and ISR, and of course improving the statistical precision upon the current measurements. The BaBar experiment at the PEP-II asymmetric collider, designed to perform precision measurement of CP violation in the B meson system, has an extensive quarkonium spectroscopy program. Recent BaBar outcomes on the X(3872) and Y(4260) and a new result on the Y(3940) are reported here.