Molecular Data Analysis Using R

Molecular Data Analysis Using R
Author: Csaba Ortutay
Publisher: John Wiley & Sons
Total Pages: 409
Release: 2016-12-29
Genre: Medical
ISBN: 1119165040

Download Molecular Data Analysis Using R Book in PDF, Epub and Kindle

This book addresses the difficulties experienced by wet lab researchers with the statistical analysis of molecular biology related data. The authors explain how to use R and Bioconductor for the analysis of experimental data in the field of molecular biology. The content is based upon two university courses for bioinformatics and experimental biology students (Biological Data Analysis with R and High-throughput Data Analysis with R). The material is divided into chapters based upon the experimental methods used in the laboratories. Key features include: • Broad appeal--the authors target their material to researchers in several levels, ensuring that the basics are always covered. • First book to explain how to use R and Bioconductor for the analysis of several types of experimental data in the field of molecular biology. • Focuses on R and Bioconductor, which are widely used for data analysis. One great benefit of R and Bioconductor is that there is a vast user community and very active discussion in place, in addition to the practice of sharing codes. Further, R is the platform for implementing new analysis approaches, therefore novel methods are available early for R users.

Molecular Data Analysis Using R

Molecular Data Analysis Using R
Author: Csaba Ortutay
Publisher: John Wiley & Sons
Total Pages: 354
Release: 2017-02-06
Genre: Medical
ISBN: 1119165024

Download Molecular Data Analysis Using R Book in PDF, Epub and Kindle

This book addresses the difficulties experienced by wet lab researchers with the statistical analysis of molecular biology related data. The authors explain how to use R and Bioconductor for the analysis of experimental data in the field of molecular biology. The content is based upon two university courses for bioinformatics and experimental biology students (Biological Data Analysis with R and High-throughput Data Analysis with R). The material is divided into chapters based upon the experimental methods used in the laboratories. Key features include: • Broad appeal--the authors target their material to researchers in several levels, ensuring that the basics are always covered. • First book to explain how to use R and Bioconductor for the analysis of several types of experimental data in the field of molecular biology. • Focuses on R and Bioconductor, which are widely used for data analysis. One great benefit of R and Bioconductor is that there is a vast user community and very active discussion in place, in addition to the practice of sharing codes. Further, R is the platform for implementing new analysis approaches, therefore novel methods are available early for R users.

R Programming: An Approach to Data Analytics

R Programming: An Approach to Data Analytics
Author: G. Sudhamathy, C. Jothi Venkateswaran
Publisher: MJP Publisher
Total Pages: 383
Release: 2019-06-03
Genre: Computers
ISBN:

Download R Programming: An Approach to Data Analytics Book in PDF, Epub and Kindle

Chapter 1 - Basics of R, Chapter 2 - Data Types in R , Chapter 3 - Data Preparation. Chapter 4 - Graphics using R, Chapter 5 - Statistical Analysis Using R, Chapter 6 - Data Mining Using R, Chapter 7 - Case Studies. Huge volumes of data are being generated by many sources like commercial enterprises, scientific domains and general public daily. According to a recent research, data production will be 44 times greater in 2020 than it was in 2010. Data being a vital resource for business organizations and other domains like education, health, manufacturing etc., its management and analysis is becoming increasingly important. This data, due to its volume, variety and velocity, often referred to as Big Data, also includes highly unstructured data in the form of textual documents, web pages, graphical information and social media comments. Since Big Data is characterised by massive sample sizes, high dimensionality and intrinsic heterogeneity, traditional approaches to data management, visualisation and analytics are no longer satisfactorily applicable. There is therefore an urgent need for newer tools, better frameworks and workable methodologies for such data to be appropriately categorised, logically segmented, efficiently analysed and securely managed. This requirement has resulted in an emerging new discipline of Data Science that is now gaining much attention with researchers and practitioners in the field of Data Analytics.

Computer Simulation and Data Analysis in Molecular Biology and Biophysics

Computer Simulation and Data Analysis in Molecular Biology and Biophysics
Author: Victor Bloomfield
Publisher: Springer Science & Business Media
Total Pages: 325
Release: 2009-06-05
Genre: Science
ISBN: 1441900837

Download Computer Simulation and Data Analysis in Molecular Biology and Biophysics Book in PDF, Epub and Kindle

This book provides an introduction to two important aspects of modern bioch- istry, molecular biology, and biophysics: computer simulation and data analysis. My aim is to introduce the tools that will enable students to learn and use some f- damental methods to construct quantitative models of biological mechanisms, both deterministicandwithsomeelementsofrandomness;tolearnhowconceptsofpr- ability can help to understand important features of DNA sequences; and to apply a useful set of statistical methods to analysis of experimental data. The availability of very capable but inexpensive personal computers and software makes it possible to do such work at a much higher level, but in a much easier way, than ever before. TheExecutiveSummaryofthein?uential2003reportfromtheNationalAcademy of Sciences, “BIO 2010: Transforming Undergraduate Education for Future - search Biologists” [12], begins The interplay of the recombinant DNA, instrumentation, and digital revolutions has p- foundly transformed biological research. The con?uence of these three innovations has led to important discoveries, such as the mapping of the human genome. How biologists design, perform, and analyze experiments is changing swiftly. Biological concepts and models are becoming more quantitative, and biological research has become critically dependent on concepts and methods drawn from other scienti?c disciplines. The connections between the biological sciences and the physical sciences, mathematics, and computer science are rapidly becoming deeper and more extensive.

Analysis of Phylogenetics and Evolution with R

Analysis of Phylogenetics and Evolution with R
Author: Emmanuel Paradis
Publisher: Springer Science & Business Media
Total Pages: 221
Release: 2006-11-25
Genre: Science
ISBN: 0387351000

Download Analysis of Phylogenetics and Evolution with R Book in PDF, Epub and Kindle

This book integrates a wide variety of data analysis methods into a single and flexible interface: the R language. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.

Data Analysis in Molecular Biology and Evolution

Data Analysis in Molecular Biology and Evolution
Author: Xuhua Xia
Publisher: Springer Science & Business Media
Total Pages: 284
Release: 2007-05-08
Genre: Science
ISBN: 030646893X

Download Data Analysis in Molecular Biology and Evolution Book in PDF, Epub and Kindle

Data Analysis in Molecular Biology and Evolution introduces biologists to DAMBE, a proprietary, user-friendly computer program for molecular data analysis. The unique combination of this book and software will allow biologists not only to understand the rationale behind a variety of computational tools in molecular biology and evolution, but also to gain instant access to these tools for use in their laboratories. Data Analysis in Molecular Biology and Evolution serves as an excellent resource for advanced level undergraduates or graduates as well as for professionals working in the field.

Using R for Biostatistics

Using R for Biostatistics
Author: Thomas W. MacFarland
Publisher: Springer Nature
Total Pages: 929
Release: 2021-03-02
Genre: Medical
ISBN: 3030624048

Download Using R for Biostatistics Book in PDF, Epub and Kindle

This book introduces the open source R software language that can be implemented in biostatistics for data organization, statistical analysis, and graphical presentation. In the years since the authors’ 2014 work Introduction to Data Analysis and Graphical Presentation in Biostatistics with R, the R user community has grown exponentially and the R language has increased in maturity and functionality. This updated volume expands upon skill-sets useful for students and practitioners in the biological sciences by describing how to work with data in an efficient manner, how to engage in meaningful statistical analyses from multiple perspectives, and how to generate high-quality graphics for professional publication of their research. A common theme for research in the diverse biological sciences is that decision-making depends on the empirical use of data. Beginning with a focus on data from a parametric perspective, the authors address topics such as Student t-Tests for independent samples and matched pairs; oneway and twoway analyses of variance; and correlation and linear regression. The authors also demonstrate the importance of a nonparametric perspective for quality assurance through chapters on the Mann-Whitney U Test, Wilcoxon Matched-Pairs Signed-Ranks test, Kruskal-Wallis H-Test for Oneway Analysis of Variance, and the Friedman Twoway Analysis of Variance. To address the element of data presentation, the book also provides an extensive review of the many graphical functions available with R. There are now perhaps more than 15,000 external packages available to the R community. The authors place special emphasis on graphics using the lattice package and the ggplot2 package, as well as less common, but equally useful, figures such as bean plots, strip charts, and violin plots. A robust package of supplementary material, as well as an introduction of the development of both R and the discipline of biostatistics, makes this ideal for novice learners as well as more experienced practitioners.

Clinical Trial Data Analysis Using R

Clinical Trial Data Analysis Using R
Author: Ding-Geng (Din) Chen
Publisher: CRC Press
Total Pages: 384
Release: 2010-12-14
Genre: Mathematics
ISBN: 1439840210

Download Clinical Trial Data Analysis Using R Book in PDF, Epub and Kindle

Too often in biostatistical research and clinical trials, a knowledge gap exists between developed statistical methods and the applications of these methods. Filling this gap, Clinical Trial Data Analysis Using R provides a thorough presentation of biostatistical analyses of clinical trial data and shows step by step how to implement the statistical methods using R. The book’s practical, detailed approach draws on the authors’ 30 years of real-world experience in biostatistical research and clinical development. Each chapter presents examples of clinical trials based on the authors’ actual experiences in clinical drug development. Various biostatistical methods for analyzing the data are then identified. The authors develop analysis code step by step using appropriate R packages and functions. This approach enables readers to gain an understanding of the analysis methods and R implementation so that they can use R to analyze their own clinical trial data. With step-by-step illustrations of R implementations, this book shows how to easily use R to simulate and analyze data from a clinical trial. It describes numerous up-to-date statistical methods and offers sound guidance on the processes involved in clinical trials.

Applied Statistical Genetics with R

Applied Statistical Genetics with R
Author: Andrea S. Foulkes
Publisher: Springer Science & Business Media
Total Pages: 264
Release: 2009-04-28
Genre: Science
ISBN: 038789554X

Download Applied Statistical Genetics with R Book in PDF, Epub and Kindle

Statistical genetics has become a core course in many graduate programs in public health and medicine. This book presents fundamental concepts and principles in this emerging field at a level that is accessible to students and researchers with a first course in biostatistics. Extensive examples are provided using publicly available data and the open source, statistical computing environment, R.

Bioinformatics and Computational Biology Solutions Using R and Bioconductor

Bioinformatics and Computational Biology Solutions Using R and Bioconductor
Author: Robert Gentleman
Publisher: Springer Science & Business Media
Total Pages: 506
Release: 2005-08-31
Genre: Computers
ISBN: 9780387251462

Download Bioinformatics and Computational Biology Solutions Using R and Bioconductor Book in PDF, Epub and Kindle

Full four-color book. Some of the editors created the Bioconductor project and Robert Gentleman is one of the two originators of R. All methods are illustrated with publicly available data, and a major section of the book is devoted to fully worked case studies. Code underlying all of the computations that are shown is made available on a companion website, and readers can reproduce every number, figure, and table on their own computers.