Machine Learning of Spatiotemporal Bursting Behavior in Developing Neural Networks

Machine Learning of Spatiotemporal Bursting Behavior in Developing Neural Networks
Author: Jewel YunHsuan Lee
Publisher:
Total Pages: 51
Release: 2018
Genre: Machine learning
ISBN:

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Experimental investigation of the collective dynamics in large networks of neurons is a fundamental step towards understanding the mechanisms behind signal and information processing in the brain. In the last decade, the emergence of high performance computing technology has allowed long-duration numerical simulations to model large-scale neural networks. These simulated networks exhibit behaviors (ranging from stochastic spiking to synchronized bursting) that are observed in living preparations. These simulations' high spatiotemporal resolution and long duration produce data that, in terms of both quantity and complexity, challenge our interpretative abilities. This thesis presents an application of machine learning techniques to bridge the gap between microscopic and macroscopic behaviors and identify the small-scale activity that leads to large-scale behavior, reducing data complexity to a level that can be amenable to further analysis.

Understanding Localized Burst Trigger Patterns in Developing Neural Networks Using Deep Learning

Understanding Localized Burst Trigger Patterns in Developing Neural Networks Using Deep Learning
Author: Smriti Singh
Publisher:
Total Pages: 95
Release: 2020
Genre:
ISBN:

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The brain is a complex, interconnected network par excellence. It is made up of intricate connections of neurons, responsible for transmission of signals throughout the body. Over time, experimental studies have illustrated a variety of behavioral features of network dynamics, ranging from stochastic spiking to synchronized bursting observed in the living preparations of neuronal cultures. A fundamental feature of developing neural circuits is the presence of spontaneous network activity. Such spontaneous activity plays putative roles ranging from synaptic development and maintenance to anticipatory states which assist animals in reaching rapid decisions with limited sensory input. Understanding the mechanisms of spontaneously generated activity and interaction patterns between neurons are, therefore, issues of substantial importance. But while changes in the dynamics of coordinated, spontaneous spiking activity have been investigated in different in vivo and in vitro neuronal systems, the mechanisms underlying the generation of these spontaneous spiking activities still remain unclear. Computational simulations help researchers to gain a more detailed understanding of activity patterns in large networks. The BrainGrid simulator is a neural simulator, based on a leaky integrate-and-fire computational model and developed in UW Bothell, that allows us to perform detailed analysis of the effects of model parameters on burst shape and timing, their changes, their patterns and the inter-relationship among these behaviors, gross network structure, and model parameters. Researchers draw inferences about dynamics of these networks from simulation results. These simulations’ high spatiotemporal resolution and long duration produce data that, in terms of both quantity and complexity, challenge our interpretative abilities. Therefore, this thesis focuses on uncovering underlying patterns during spontaneous activities using various machine learning and deep learning techniques and presents their comparison based on different slices from the data. To derive patterns in activity initiation, we also implement model interpretability analysis using SHAPley Analysis to obtain hidden patterns in data and understand the cause of a model’s decision. Concisely, this thesis applies AI techniques to clarify localized activity patterns that trigger network bursts in cortical neural networks.

Spiking Neuron Models

Spiking Neuron Models
Author: Wulfram Gerstner
Publisher: Cambridge University Press
Total Pages: 498
Release: 2002-08-15
Genre: Computers
ISBN: 9780521890793

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Neurons in the brain communicate by short electrical pulses, the so-called action potentials or spikes. How can we understand the process of spike generation? How can we understand information transmission by neurons? What happens if thousands of neurons are coupled together in a seemingly random network? How does the network connectivity determine the activity patterns? And, vice versa, how does the spike activity influence the connectivity pattern? These questions are addressed in this 2002 introduction to spiking neurons aimed at those taking courses in computational neuroscience, theoretical biology, biophysics, or neural networks. The approach will suit students of physics, mathematics, or computer science; it will also be useful for biologists who are interested in mathematical modelling. The text is enhanced by many worked examples and illustrations. There are no mathematical prerequisites beyond what the audience would meet as undergraduates: more advanced techniques are introduced in an elementary, concrete fashion when needed.

Neuronal Networks in Brain Function, CNS Disorders, and Therapeutics

Neuronal Networks in Brain Function, CNS Disorders, and Therapeutics
Author: Carl Faingold
Publisher: Academic Press
Total Pages: 537
Release: 2013-12-26
Genre: Medical
ISBN: 0124158641

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Neuronal Networks in Brain Function, CNS Disorders, and Therapeutics, edited by two leaders in the field, offers a current and complete review of what we know about neural networks. How the brain accomplishes many of its more complex tasks can only be understood via study of neuronal network control and network interactions. Large networks can undergo major functional changes, resulting in substantially different brain function and affecting everything from learning to the potential for epilepsy. With chapters authored by experts in each topic, this book advances the understanding of: How the brain carries out important tasks via networks How these networks interact in normal brain function Major mechanisms that control network function The interaction of the normal networks to produce more complex behaviors How brain disorders can result from abnormal interactions How therapy of disorders can be advanced through this network approach This book will benefit neuroscience researchers and graduate students with an interest in networks, as well as clinicians in neuroscience, pharmacology, and psychiatry dealing with neurobiological disorders. Utilizes perspectives and tools from various neuroscience subdisciplines (cellular, systems, physiologic), making the volume broadly relevant Chapters explore normal network function and control mechanisms, with an eye to improving therapies for brain disorders Reflects predominant disciplinary shift from an anatomical to a functional perspective of the brain Edited work with chapters authored by leaders in the field around the globe – the broadest, most expert coverage available

Criticality in Neural Systems

Criticality in Neural Systems
Author: Dietmar Plenz
Publisher: John Wiley & Sons
Total Pages: 734
Release: 2014-04-14
Genre: Computers
ISBN: 3527651020

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Neurowissenschaftler suchen nach Antworten auf die Fragen, wie wir lernen und Information speichern, welche Prozesse im Gehirn verantwortlich sind und in welchem Zeitrahmen diese ablaufen. Die Konzepte, die aus der Physik kommen und weiterentwickelt werden, können in Medizin und Soziologie, aber auch in Robotik und Bildanalyse Anwendung finden. Zentrales Thema dieses Buches sind die sogenannten kritischen Phänomene im Gehirn. Diese werden mithilfe mathematischer und physikalischer Modelle beschrieben, mit denen man auch Erdbeben, Waldbrände oder die Ausbreitung von Epidemien modellieren kann. Neuere Erkenntnisse haben ergeben, dass diese selbstgeordneten Instabilitäten auch im Nervensystem auftreten. Dieses Referenzwerk stellt theoretische und experimentelle Befunde internationaler Gehirnforschung vor zeichnet die Perspektiven dieses neuen Forschungsfeldes auf.

Complex Systems

Complex Systems
Author: Georgi M. Dimirovski
Publisher: Springer
Total Pages: 706
Release: 2016-05-19
Genre: Technology & Engineering
ISBN: 3319288601

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This book gives a wide-ranging description of the many facets of complex dynamic networks and systems within an infrastructure provided by integrated control and supervision: envisioning, design, experimental exploration, and implementation. The theoretical contributions and the case studies presented can reach control goals beyond those of stabilization and output regulation or even of adaptive control. Reporting on work of the Control of Complex Systems (COSY) research program, Complex Systems follows from and expands upon an earlier collection: Control of Complex Systems by introducing novel theoretical techniques for hard-to-control networks and systems. The major common feature of all the superficially diverse contributions encompassed by this book is that of spotting and exploiting possible areas of mutual reinforcement between control, computing and communications. These help readers to achieve not only robust stable plant system operation but also properties such as collective adaptivity, integrity and survivability at the same time retaining desired performance quality. Applications in the individual chapters are drawn from: • the general implementation of model-based diagnosis and systems engineering in medical technology, in communication, and in power and airport networks; • the creation of biologically inspired control brains and safety-critical human–machine systems, • process-industrial uses; • biped robots; • large space structures and unmanned aerial vehicles; and • precision servomechanisms and other advanced technologies. Complex Systems provides researchers from engineering, applied mathematics and computer science backgrounds with innovative theoretical and practical insights into the state-of-the-art of complex networks and systems research. It employs physical implementations and extensive computer simulations. Graduate students specializing in complex-systems research will also learn much from this collection./pp

Group and Crowd Behavior for Computer Vision

Group and Crowd Behavior for Computer Vision
Author: Vittorio Murino
Publisher: Academic Press
Total Pages: 440
Release: 2017-04-18
Genre: Computers
ISBN: 0128092807

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Group and Crowd Behavior for Computer Vision provides a multidisciplinary perspective on how to solve the problem of group and crowd analysis and modeling, combining insights from the social sciences with technological ideas in computer vision and pattern recognition. The book answers many unresolved issues in group and crowd behavior, with Part One providing an introduction to the problems of analyzing groups and crowds that stresses that they should not be considered as completely diverse entities, but as an aggregation of people. Part Two focuses on features and representations with the aim of recognizing the presence of groups and crowds in image and video data. It discusses low level processing methods to individuate when and where a group or crowd is placed in the scene, spanning from the use of people detectors toward more ad-hoc strategies to individuate group and crowd formations. Part Three discusses methods for analyzing the behavior of groups and the crowd once they have been detected, showing how to extract semantic information, predicting/tracking the movement of a group, the formation or disaggregation of a group/crowd and the identification of different kinds of groups/crowds depending on their behavior. The final section focuses on identifying and promoting datasets for group/crowd analysis and modeling, presenting and discussing metrics for evaluating the pros and cons of the various models and methods. This book gives computer vision researcher techniques for segmentation and grouping, tracking and reasoning for solving group and crowd modeling and analysis, as well as more general problems in computer vision and machine learning. Presents the first book to cover the topic of modeling and analysis of groups in computer vision Discusses the topics of group and crowd modeling from a cross-disciplinary perspective, using social science anthropological theories translated into computer vision algorithms Focuses on group and crowd analysis metrics Discusses real industrial systems dealing with the problem of analyzing groups and crowds

Handbook of Natural Computing

Handbook of Natural Computing
Author: Grzegorz Rozenberg
Publisher: Springer
Total Pages: 2052
Release: 2012-07-09
Genre: Computers
ISBN: 9783540929093

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Natural Computing is the field of research that investigates both human-designed computing inspired by nature and computing taking place in nature, i.e., it investigates models and computational techniques inspired by nature and also it investigates phenomena taking place in nature in terms of information processing. Examples of the first strand of research covered by the handbook include neural computation inspired by the functioning of the brain; evolutionary computation inspired by Darwinian evolution of species; cellular automata inspired by intercellular communication; swarm intelligence inspired by the behavior of groups of organisms; artificial immune systems inspired by the natural immune system; artificial life systems inspired by the properties of natural life in general; membrane computing inspired by the compartmentalized ways in which cells process information; and amorphous computing inspired by morphogenesis. Other examples of natural-computing paradigms are molecular computing and quantum computing, where the goal is to replace traditional electronic hardware, e.g., by bioware in molecular computing. In molecular computing, data are encoded as biomolecules and then molecular biology tools are used to transform the data, thus performing computations. In quantum computing, one exploits quantum-mechanical phenomena to perform computations and secure communications more efficiently than classical physics and, hence, traditional hardware allows. The second strand of research covered by the handbook, computation taking place in nature, is represented by investigations into, among others, the computational nature of self-assembly, which lies at the core of nanoscience, the computational nature of developmental processes, the computational nature of biochemical reactions, the computational nature of bacterial communication, the computational nature of brain processes, and the systems biology approach to bionetworks where cellular processes are treated in terms of communication and interaction, and, hence, in terms of computation. We are now witnessing exciting interaction between computer science and the natural sciences. While the natural sciences are rapidly absorbing notions, techniques and methodologies intrinsic to information processing, computer science is adapting and extending its traditional notion of computation, and computational techniques, to account for computation taking place in nature around us. Natural Computing is an important catalyst for this two-way interaction, and this handbook is a major record of this important development.

Principles of Neural Coding

Principles of Neural Coding
Author: Rodrigo Quian Quiroga
Publisher: CRC Press
Total Pages: 625
Release: 2013-05-06
Genre: Medical
ISBN: 1439853312

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Understanding how populations of neurons encode information is the challenge faced by researchers in the field of neural coding. Focusing on the many mysteries and marvels of the mind has prompted a prominent team of experts in the field to put their heads together and fire up a book on the subject. Simply titled Principles of Neural Coding, this b

Neuromorphic Photonics

Neuromorphic Photonics
Author: Paul R. Prucnal
Publisher: CRC Press
Total Pages: 412
Release: 2017-05-08
Genre: Science
ISBN: 1498725244

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This book sets out to build bridges between the domains of photonic device physics and neural networks, providing a comprehensive overview of the emerging field of "neuromorphic photonics." It includes a thorough discussion of evolution of neuromorphic photonics from the advent of fiber-optic neurons to today’s state-of-the-art integrated laser neurons, which are a current focus of international research. Neuromorphic Photonics explores candidate interconnection architectures and devices for integrated neuromorphic networks, along with key functionality such as learning. It is written at a level accessible to graduate students, while also intending to serve as a comprehensive reference for experts in the field.