Divergence with Genetic Exchange

Divergence with Genetic Exchange
Author: Michael Lynn Arnold
Publisher: Oxford University Press
Total Pages: 269
Release: 2016
Genre: Medical
ISBN: 0198726023

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This book is an investigation into processes associated with evolutionary divergence and diversification, focussing on the role played by the exchange of genes between divergent lineages.

Evolution Through Genetic Exchange

Evolution Through Genetic Exchange
Author: Michael L Arnold
Publisher: Oxford University Press
Total Pages: 271
Release: 2006-07-27
Genre: Science
ISBN: 0198570066

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This is the first book to focus on the rapidly expanding field of reticulate (non-treelike) or network evolution. Written by a top researcher in the field, this book includes a wealth of examples from viral, prokaryotic and eukaryotic clades.

In the Light of Evolution

In the Light of Evolution
Author: National Academy of Sciences
Publisher:
Total Pages: 388
Release: 2007
Genre: Science
ISBN:

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The Arthur M. Sackler Colloquia of the National Academy of Sciences address scientific topics of broad and current interest, cutting across the boundaries of traditional disciplines. Each year, four or five such colloquia are scheduled, typically two days in length and international in scope. Colloquia are organized by a member of the Academy, often with the assistance of an organizing committee, and feature presentations by leading scientists in the field and discussions with a hundred or more researchers with an interest in the topic. Colloquia presentations are recorded and posted on the National Academy of Sciences Sackler colloquia website and published on CD-ROM. These Colloquia are made possible by a generous gift from Mrs. Jill Sackler, in memory of her husband, Arthur M. Sackler.

Divergence with Genetic Exchange

Divergence with Genetic Exchange
Author: Michael Lynn Arnold
Publisher: Oxford University Press
Total Pages: 269
Release: 2016
Genre: Medical
ISBN: 0198755112

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This book is an investigation into processes associated with evolutionary divergence and diversification, focussing on the role played by the exchange of genes between divergent lineages.

Reticulate Evolution

Reticulate Evolution
Author: Nathalie Gontier
Publisher: Springer
Total Pages: 345
Release: 2015-07-09
Genre: Science
ISBN: 3319163450

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Written for non-experts, this volume introduces the mechanisms that underlie reticulate evolution. Chapters are either accompanied with glossaries that explain new terminology or timelines that position pioneering scholars and their major discoveries in their historical contexts. The contributing authors outline the history and original context of discovery of symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infectious heredity. By applying key insights from the areas of molecular (phylo)genetics, microbiology, virology, ecology, systematics, immunology, epidemiology and computational science, they demonstrate how reticulate evolution impacts successful survival, fitness and speciation. Reticulate evolution brings forth a challenge to the standard Neo-Darwinian framework, which defines life as the outcome of bifurcation and ramification patterns brought forth by the vertical mechanism of natural selection. Reticulate evolution puts forward a pattern in the tree of life that is characterized by horizontal mergings and lineage crossings induced by symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infective heredity, making the “tree of life” look more like a “web of life.” On an epistemological level, the various means by which hereditary material can be transferred horizontally challenges our classic notions of units and levels of evolution, fitness, modes of transmission, linearity, communities and biological individuality. The case studies presented examine topics including the origin of the eukaryotic cell and its organelles through symbiogenesis; the origin of algae through primary and secondary symbiosis and dinoflagellates through tertiary symbiosis; the superorganism and holobiont as units of evolution; how endosymbiosis induces speciation in multicellular life forms; transferrable and non-transferrable plasmids and how they symbiotically interact with their host; the means by which pro- and eukaryotic organisms transfer genes laterally (bacterial transformation, transduction and conjugation as well as transposons and other mobile genetic elements); hybridization and divergence with gene flow in sexually-reproducing individuals; current (human) microbiome and viriome studies that impact our knowledge concerning the evolution of organismal health and acquired immunity; and how symbiosis and symbiogenesis can be modelled in computational evolution.

The Pangenome

The Pangenome
Author: Hervé Tettelin
Publisher: Springer Nature
Total Pages: 311
Release: 2020-04-30
Genre: Science
ISBN: 3030382818

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This open access book offers the first comprehensive account of the pan-genome concept and its manifold implications. The realization that the genetic repertoire of a biological species always encompasses more than the genome of each individual is one of the earliest examples of big data in biology that opened biology to the unbounded. The study of genetic variation observed within a species challenges existing views and has profound consequences for our understanding of the fundamental mechanisms underpinning bacterial biology and evolution. The underlying rationale extends well beyond the initial prokaryotic focus to all kingdoms of life and evolves into similar concepts for metagenomes, phenomes and epigenomes. The book’s respective chapters address a range of topics, from the serendipitous emergence of the pan-genome concept and its impacts on the fields of microbiology, vaccinology and antimicrobial resistance, to the study of microbial communities, bioinformatic applications and mathematical models that tie in with complex systems and economic theory. Given its scope, the book will appeal to a broad readership interested in population dynamics, evolutionary biology and genomics.

Natural Hybridization and Evolution

Natural Hybridization and Evolution
Author: Michael L. Arnold
Publisher: Oxford University Press
Total Pages: 230
Release: 1997-01-30
Genre: Science
ISBN: 0195099753

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Michael L. Arnold offers an exploration of the evolutionary process of natural hybridisation, and presents data from various sources that support the paradigm of natural hybridisation as an important evolutionary process.

Evaluating Gene Flow, Gene Expression Divergence, and Hybrid Expression in Drosophila Sister Species

Evaluating Gene Flow, Gene Expression Divergence, and Hybrid Expression in Drosophila Sister Species
Author: Danielle Kay Herrig
Publisher:
Total Pages: 174
Release: 2016
Genre: Drosophila
ISBN:

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A primary goal of evolutionary biology is to elucidate the factors necessary for a single interbreeding species to become two independent species. Observations and data collected and recorded since the 6th century B.C. have added to our comprehension of the "the origin of species--that mystery of mysteries" (DARWIN 1859). To continue to add to our knowledge of how speciation occurs and how species interact, it is crucial to determine 1) how different categories of genes evolve as species diverge, 2) what happens to hybrids of two species, and 3) if genetic exchange is allowed between species, where it is located. In the first research aim of my dissertation, I look for population genetic trends and signatures of gene flow in a minimally studied set of Drosophila sister species using sequences of 26 nuclear and mitochondrial regions in 29 isofemale lines of D. subobscura and D. madierensis. Standard population genetic tests revealed that the X chromosome evolves faster than the autosomes in these species. We also find evidence of genetic exchange for some autosomal genes while both the sex chromosomes and mitochondrial genomes remain distinct between species. In the second research aim of my dissertation, I assess the rates of gene expression evolution for sex-biased genes located on the X chromosome and autosomes. We find that gene expression evolves faster in males than females and find evidence of faster-X evolution that is exclusive to genes expressed at higher levels in males. The X chromosome has previously been shown to have a disproportionately large influence on hybrid male sterility compared to autosomes. I investigate this trend and find that the sex chromosomes have a large influence on autosomal expression levels in hybrid males and hybrid females. Specifically, uniparental inheritance of the X chromosome results in greater differences between reciprocal hybrids and higher levels of hybrid misexpression.

Evolution's Wedge

Evolution's Wedge
Author: David Pfennig
Publisher: Univ of California Press
Total Pages: 319
Release: 2012-10-25
Genre: Nature
ISBN: 0520954041

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Evolutionary biology has long sought to explain how new traits and new species arise. Darwin maintained that competition is key to understanding this biodiversity and held that selection acting to minimize competition causes competitors to become increasingly different, thereby promoting new traits and new species. Despite Darwin’s emphasis, competition’s role in diversification remains controversial and largely underappreciated. In their synthetic and provocative book, evolutionary ecologists David and Karin Pfennig explore competition's role in generating and maintaining biodiversity. The authors discuss how selection can lessen resource competition or costly reproductive interactions by promoting trait evolution through a process known as character displacement. They further describe character displacement’s underlying genetic and developmental mechanisms. The authors then consider character displacement’s myriad downstream effects, ranging from shaping ecological communities to promoting new traits and new species and even fueling large-scale evolutionary trends. Drawing on numerous studies from natural populations, and written for a broad audience, Evolution’s Wedge seeks to inspire future research into character displacement’s many implications for ecology and evolution.

Selective Sweep

Selective Sweep
Author: Dmitry I. Nurminsky
Publisher: Springer Science & Business Media
Total Pages: 129
Release: 2007-07-16
Genre: Science
ISBN: 0387276513

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Selective Sweep deals with the theory and practice of detection of recent adaptive evolution at the genomic level from the patterns of DNA polymorphism. Recent advances in genomic sequencing provide the background for analysis of polymorphic sites in large chromosomal regions or even in whole genome, thus providing the tool for effective identification of loci that are under strong pressure of positive selection. For this reason, the studies of selective sweep, which formerly were of interest mostly to evolutionists, have become widely recognized and appreciated by the large biological community involved in identification of the targets of selection during speciation, host/pathogen interactions, and resistance to chemical agents.