Computational Modeling of Genetic and Biochemical Networks

Computational Modeling of Genetic and Biochemical Networks
Author: James M. Bower
Publisher: MIT Press
Total Pages: 386
Release: 2001
Genre: Computers
ISBN: 9780262524230

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How new modeling techniques can be used to explore functionally relevant molecular and cellular relationships.

Computational Modeling of Gene Regulatory Networks

Computational Modeling of Gene Regulatory Networks
Author: Hamid Bolouri
Publisher: Imperial College Press
Total Pages: 341
Release: 2008
Genre: Medical
ISBN: 1848162200

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This book serves as an introduction to the myriad computational approaches to gene regulatory modeling and analysis, and is written specifically with experimental biologists in mind. Mathematical jargon is avoided and explanations are given in intuitive terms. In cases where equations are unavoidable, they are derived from first principles or, at the very least, an intuitive description is provided. Extensive examples and a large number of model descriptions are provided for use in both classroom exercises as well as self-guided exploration and learning. As such, the book is ideal for self-learning and also as the basis of a semester-long course for undergraduate and graduate students in molecular biology, bioengineering, genome sciences, or systems biology.

Networks in Systems Biology

Networks in Systems Biology
Author: Fabricio Alves Barbosa da Silva
Publisher: Springer Nature
Total Pages: 381
Release: 2020-10-03
Genre: Computers
ISBN: 3030518620

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This book presents a range of current research topics in biological network modeling, as well as its application in studies on human hosts, pathogens, and diseases. Systems biology is a rapidly expanding field that involves the study of biological systems through the mathematical modeling and analysis of large volumes of biological data. Gathering contributions from renowned experts in the field, some of the topics discussed in depth here include networks in systems biology, the computational modeling of multidrug-resistant bacteria, and systems biology of cancer. Given its scope, the book is intended for researchers, advanced students, and practitioners of systems biology. The chapters are research-oriented, and present some of the latest findings on their respective topics.

Introduction to Biological Networks

Introduction to Biological Networks
Author: Alpan Raval
Publisher: CRC Press
Total Pages: 329
Release: 2016-04-19
Genre: Computers
ISBN: 1420010360

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The new research area of genomics-inspired network biology lacks an introductory book that enables both physical/computational scientists and biologists to obtain a general yet sufficiently rigorous perspective of current thinking. Filling this gap, Introduction to Biological Networks provides a thorough introduction to genomics-inspired network bi

Transactions on Computational Systems Biology XI

Transactions on Computational Systems Biology XI
Author: Ralph-Johan Back
Publisher: Springer
Total Pages: 343
Release: 2009-10-01
Genre: Computers
ISBN: 3642041868

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This issue on Computational Models for Cell Processes is based on a workshop that took place in Turku, Finland, May 2008. The papers span a mix of approaches to systems biology, ranging from quantitative techniques to computing paradigms inspired by biology.

Computational Methods in Systems Biology

Computational Methods in Systems Biology
Author: Corrado Priami
Publisher: Springer Science & Business Media
Total Pages: 224
Release: 2003-02-07
Genre: Computers
ISBN: 3540006052

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Rovereto,December2002 CorradoPriami ProgrammeCommitteeofCMSB 2003 CorradoPriami(Chair),UniversityofTrento(Italy), CharlesAu?ray,CNRS,Villejuif(France), CosimaBaldari,Universit`adiSiena(Italy), AlexanderBockmayr,Universit ́eHenriPoincar ́e(France), LucaCardelli,MicrosoftResearchCambridge(UK), VincentDanos,Universit ́eParisVII(France), PierpaoloDegano,Universitad ` iPisa(Italy), Francois ̧ Fages,INRIA,Rocquencourt(France), DrabløsFinn,NorwegianUniversityofScienceandTechnology,Trondheim(N- way), MonikaHeiner,BrandenburgUniversityofTechnologyatCottbus(Germany), InaKoch,UniversityofAppliedSciencesBerlin,(Germany), JohnE.

Modeling and Simulation of Biological Networks

Modeling and Simulation of Biological Networks
Author: American Mathematical Society. Short Course, Modeling and Simulation of Biological Networks
Publisher: American Mathematical Soc.
Total Pages: 161
Release: 2007
Genre: Mathematics
ISBN: 0821839640

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The aim of this volume is to explain some of the biology and the computational and mathematical challenges with the modeling and simulation of biological networks. The different chapters provide examples of how these challenges are met, with particular emphasis on nontraditional mathematical approaches. The volume features a broad spectrum of networks across scales, ranging from biochemical networks within a single cell to epidemiological networks encompassing whole cities. Also, this volume is broad in the range of mathematical tools used in solving problems involving these networks.

Uncertainty in Biology

Uncertainty in Biology
Author: Liesbet Geris
Publisher: Springer
Total Pages: 478
Release: 2015-10-26
Genre: Technology & Engineering
ISBN: 3319212966

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Computational modeling allows to reduce, refine and replace animal experimentation as well as to translate findings obtained in these experiments to the human background. However these biomedical problems are inherently complex with a myriad of influencing factors, which strongly complicates the model building and validation process. This book wants to address four main issues related to the building and validation of computational models of biomedical processes: 1. Modeling establishment under uncertainty 2. Model selection and parameter fitting 3. Sensitivity analysis and model adaptation 4. Model predictions under uncertainty In each of the abovementioned areas, the book discusses a number of key-techniques by means of a general theoretical description followed by one or more practical examples. This book is intended for graduate students and researchers active in the field of computational modeling of biomedical processes who seek to acquaint themselves with the different ways in which to study the parameter space of their model as well as its overall behavior.