The Mechanism and Origins of Reactivities and Selectivities in Transition-metal-catalyzed and Organocatalyzed Cycloadditions

The Mechanism and Origins of Reactivities and Selectivities in Transition-metal-catalyzed and Organocatalyzed Cycloadditions
Author: Xin Hong
Publisher:
Total Pages: 175
Release: 2014
Genre:
ISBN:

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A preeminent goal of organic synthesis is to achieve structural complexity with functional value in a step, atom, and time economical fashion. Cycloadditions, as exemplified by the Diels-Alder reaction, represent uniquely powerful processes to achieve this goal. Most of widely-used cycloadditions require transition metal or organic catalysts to achieve the desired control of reactivity and selectivity, which rely on mechanistic understandings at the molecular level. Modern density functional theory (DFT) calculations provide the foundation to achieve such level of understanding, and my PhD research focuses on studying the mechanism and selectivities of a series of important transition-metal-catalyzed and organocatalytic cycloadditions through DFT calculations. The first part of the thesis includes my studies on the mechanism and selectivities of transition-metal-catalyzed cycloadditions. Chapter 1 focuses on the mechanism and origins of selectivities in Ru(II)-catalyzed intramolecular (5+2) cycloadditions and ene reactions of vinylcyclopropanes and alkynes. The favored mechanism involves an initial ene-yne oxidative cyclization to form a ruthenacyclopentene intermediate, which is different from that found earlier with rhodium catalysts. Based on this new mechanism, solvent effect, chemoselectivity, diastereoselectivity and regioselectivity are explained. Chapter 2 includes the study of mechanism and ligand-controlled selectivities in [Ni(NHC)]-catalyzed intramolecular (5+2) cycloadditions and homo-ene reactions of vinylcyclopropanes and alkynes. The reaction mechanism of nickel catalysts is similar to that of ruthenium catalysts, which involves the alkyne-alkene cyclization to form a metallacyclopentene intermediate. The selectivity between the (5+2) and homo-ene products is determined in the subsequent competing reductive elimination and & beta;-hydride elimination steps. The anisotropic steric environments of SIPr and ItBu ligands are the major reasons for the reversed selectivity of these two similar-sized ligands. Chapter 3 emphasizes the study of terminal methyl effects in Rh(I)-catalyzed intermolecular (5+2) cycloadditions of vinylcyclopropanes and allenes. A competitive allene dimerization is found to irreversibly sequester the rhodium catalyst. This explains the necessity of methyl substituents on the reacting double bond of allenes to achieve the desired cycloadditions. The second part of the thesis focuses on my studies of the organocatalyzed cycloadditions. Chapter 4 illustrates the explorations of the mechanism and controlling factors of the organocatalyzed carbonyl-olefin metathesis. In the (3+2) cycloadditions between hydrazonium and alkenes, the distortion of reactants controls the reactivities. In the subsequent cycloreversions, the strain-release of the five-membered ring intermediates determines the reaction barriers. For these two reasons, the cyclopropene derivatives are found to be the most reactive in experiments. Chapter 5 discusses the distortion-acceleration effect of alkynyl substituents in the stepwise hexadehydro-Diels-Aleder (HDDA) Reaction. The HDDA reaction follows a stepwise mechanism with a diradical intermediate. The alkynyl substituent dramatically accelerates the HDDA reaction mainly by decreasing the distortion energy required to achieve the diradical transition state. Chapter 6 focuses on the mechanism and selectivity of N-triflylphosphoramide catalyzed (3+2) cycloaddition between hydrazones and alkenes. The protonation of hydrazones by Brønsted acid catalysts are found to be crucial for the facile (3+2) cycloaddition. This explains the acidity-dependent catalytic activities of this reaction. Based on the mechanism, we have also explained the origins of enantioselectivities when a chiral N-triflylphosphoramide catalyst is employed. Chapter 7 includes the study of mechanism and origins of switchable chemoselectivity of Ni-catalyzed C(aryl)-O and C(acyl)-O activation of aryl esters with phosphine ligands. For aryl esters, nickel with bidentate phosphine ligands cleaves C(acyl)-O and C(aryl)-O bonds via three-centered transition states, and this cleavage favors the weak C(acyl)-O bond. However, when monodentate phosphine ligands are used, the five-centered C(aryl)-O cleavage transition state makes C(aryl)-O activation favorable. In the case of aryl pivalates, nickel with bidentate phosphine ligands still favors the C(acyl)-O activation, but the subsequent decarbonylation requires very high barrier and the alternative C(aryl)-O activation occurs.

Mechanistic Origins of Activity and Selectivity in Transition Metal Catalyzed Organic Reactions

Mechanistic Origins of Activity and Selectivity in Transition Metal Catalyzed Organic Reactions
Author:
Publisher:
Total Pages: 212
Release: 2016
Genre:
ISBN:

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Transition states are the gate keepers of chemical reactions. The free energies associated with transition states determine everything of interest in a chemical reaction, namely the rate and product distribution. Attempts to categorize the repulsive and attractive forces that dictate structural and energetic features of transition states dominate mechanistic organic chemistry. Kinetic isotope effects (KIEs) provide a direct quantitative probe into transition structure because they report directly upon changes in bond strength. Furthermore, KIEs provide a satisfying means of comparison with computational efforts. However, KIE methods are almost exclusively applied to spot to spot reactions with only a single product. The information provided by studying these somewhat rare, well-behaved reactions, can be helpful, but more versatile methods are needed to investigate reactions that yield more than one product. In this dissertation, product-specific KIE, a new method developed in the lab which can simultaneously measure the KIE of all pathways in a multi-product reaction, will be introduced. In principle, the product-specific KIE methodology is able to reveal the energetic landscape of all pathways by analysis of the isotopic fractionation which records the bonding changes that occur along a reaction pathway. The information provided can be illuminating to discover the branching events in chemo-, regio- and stereo-selective reactions. Secondly, the mechanisms of two transition-metal catalyzed multi-product reactions have been discussed as examples for the application of this method with both natural abundance 13C and deuterium KIE experiments. One of them is cobalt catalyzed [2+2] and Alder-ene reaction, where a common intermediate was found before it branches to two different products. In another case, a dirhodium tetraacetate catalyzed C-H insertion was found to proceed via an initial hydride transfer transition state, followed by formation of two interconverting zwitterion intermediates before the formation of two diastereomers. Product-specific KIEs have the potential to address mechanistic questions in reactions under development and provide a basic understanding of the key transition state features necessary to develop more selective catalysis.

Catalytic Cascade Reactions

Catalytic Cascade Reactions
Author: Peng-Fei Xu
Publisher: John Wiley & Sons
Total Pages: 440
Release: 2013-11-11
Genre: Science
ISBN: 1118016025

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Demonstrates the advantages of catalytic cascade reactions for synthesizing natural products and pharmaceuticals Riding the wave of green chemistry, catalytic cascade reactions have become one of the most active research areas in organic synthesis. During a cascade reaction, just one reaction solvent, one workup procedure, and one purification step are needed, thus significantly increasing synthetic efficiency. Featuring contributions from an international team of pioneers in the field, Catalytic Cascade Reactions demonstrates the versatility and application of these reactions for synthesizing valuable compounds. The book examines both organocatalysis and transition-metal catalysis reactions, bringing readers up to date with the latest discoveries and activities in all major areas of catalytic cascade reaction research. Catalytic Cascade Reactions begins with three chapters dedicated to organocatalytic cascade reactions, exploring amines, Brønsted acids, and the application of organocatalytic cascade reactions in natural product synthesis and drug discovery. Next, the book covers: Gold-catalyzed cascade reactions Cascade reactions catalyzed by ruthenium, iron, iridium, rhodium, and copper Palladium-catalyzed cascade reactions of alkenes, alkynes, and allenes Application of transition-metal catalyzed cascade reactions in natural product synthesis and drug discovery Engineering mono- and multifunctional nanocatalysts for cascade reactions Multiple-catalyst-promoted cascade reactions All chapters are thoroughly referenced, providing quick access to important original research findings and reviews so that readers can explore individual topics in greater depth. Drawing together and analyzing published findings scattered across the literature, this book provides a single source that encapsulates our current understanding of catalytic cascade processes. Moreover, it sets the stage for the development of new catalytic cascade reactions and their applications.

Theoretical Aspects of Transition Metal Catalysis

Theoretical Aspects of Transition Metal Catalysis
Author: Gernot Frenking
Publisher: Springer Science & Business Media
Total Pages: 284
Release: 2005-06-23
Genre: Science
ISBN: 9783540235101

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Transition metal catalysis belongs to the most important chemical research areas because a ubiquitous number of chemical reactions are catalyzed by transition metal compounds. Many efforts are being made by industry and academia to find new and more efficient catalysts for chemical processes. Transition metals play a prominent role in catalytic research because they have been proven to show an enormous diversity in lowering the activation barrier for chemical reactions. For many years, the search for new catalysts was carried out by trial and error, which was costly and time consuming. The understanding of the mechanism of the catalytic process is often not very advanced because it is difficult to study the elementary steps of the catalysis with experimental techniques. The development of modern quantum chemical methods for calculating possible intermediates and transition states was a breakthrough in gaining an understanding of the reaction pathways of transition metal catalyzed reactions. This volume, organized into eight chapters written by leading scientists in the field, illustrates the progress made during the last decade. The reader will obtain a deep insight into the present state of quantum chemical research in transition metal catalysis.

Metal Promoted Selectivity in Organic Synthesis

Metal Promoted Selectivity in Organic Synthesis
Author: A. Noels
Publisher: Springer Science & Business Media
Total Pages: 375
Release: 2012-12-06
Genre: Science
ISBN: 9401134081

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The demand for selective organic reactions is growing more acute everyday. Indeed, greater product selectivity has an important impact on energy and resource utilization, in terms of reduced process energy requirements for product separation and purification, in terms of low-value by-products, and in terms of environmental acceptance and compatibility. Moreover, more and more chemicals, especially pharmaceuticals, have to be sold in an optically active form. The search for selectivity constitutes a tremendous challenge for the chemists. In the last two decades, homogeneous transition metal based catalysis has emerged as one of the most promising tools for obtaining selectivity. In connection with developments in this area, this book contains updated and expanded versions of most of the lectures presented at a Cornett course held in Trieste (Italy) in 1989 and sponsored by the European Community. A primary aim is to cultivate a deeper understanding of the parameters that govern the selectivities and stimulate a wider utilization of transition metal based catalysis in organic synthesis. All aspects of selectivity, chemo-, regio-, stereo- and enantioselectivity are considered and illustrated by applications in various fields or organic synthesis. The impact of catalysis in oxydation, reduction, carbonylation reactions, carbene chemistry, in Ni and Pd promoted dimerizations, oligomerizations as well as fonctionalisations is stressed, quite often with special emphasis laid on reaction mechanisms. In this aspect, the last chapter examplifies the interest of high pressure NMR and IR when investigating the nature of reaction intermediates in homogeneous reactions.

Organometallic Mechanisms and Catalysis

Organometallic Mechanisms and Catalysis
Author: Jay Kochi
Publisher: Elsevier
Total Pages: 642
Release: 2012-12-02
Genre: Science
ISBN: 0323144101

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Organometallic Mechanisms and Catalysis: The Role of Reactive Intermediates in Organic Processes covers the mechanistic delineation of organometallic chemistry and catalysis. This book is organized into three parts encompassing 18 chapters. The first part describes first the oxidation-reduction process of organometals, followed by discussions on the catalytic reactions of peroxides, metal-catalyzed addition to olefins, and reduction of organic halides. This part also explores other reactions involving transition metal carbonyls and metal-catalyzed reactions of aromatic diazonium salts. The second part deals with some chemical aspects of organometals, such as their stability, thermochemistry, decomposition, hemolytic pathways, and the formation of carbon-carbon bonds. The third part examines the charge transfer processes and interactions of organometals with electron acceptors. This part further looks into the cleavage and insertion reactions of organometals with electrophiles, as well as the electrophilic and electron transfer mechanisms of organometals. Organic and inorganic chemists, teachers, and students will greatly benefit from this book.

Theoretical Investigations of the Stereoselectivities and Mechanisms of Organic Reactions Catalyzed by Vicinal Diamines and Transition Metal Complexes

Theoretical Investigations of the Stereoselectivities and Mechanisms of Organic Reactions Catalyzed by Vicinal Diamines and Transition Metal Complexes
Author: Adam Simon
Publisher:
Total Pages: 185
Release: 2018
Genre:
ISBN:

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This dissertation describes the elucidation of reaction mechanisms and the sources of asymmetric induction in organic reactions with density functional theory. Modern density functional theory is used to develop and propose models for the stereoselectivity of complex organocatalytic reactions. Computations of reactions catalyzed by vicinal diamines, which involve a broad scope of substrates and reactivity, are described in Chapters 1-3. A series of collaborations with experimental research groups are elaborated on in Chapters 4-7. Chapter 1 describes a computational study of aldol reactions catalyzed by the vicinal diamine class of organocatalysts. The computations and DFT benchmark of the entire transition state landscape of a theoretical model for the simplest aldol reaction catalyzed by ethylene diamine were performed. In addition, the first successful experimental report of a vicinal diamine-catalyzed aldol reaction was studied computationally. The computations revealed a nine-membered cyclic transition state in well-defined conformations of cyclooctane. We identified that the crown (chair-chair) conformation accounted for the observed stereoselectivity in these aldol reactions. Chapter 2 elaborates on the findings in Chapter 1 of the dissertation by exploring five modern and complex examples of aldol chemistry involving elaborate vicinal diamine catalysts by density functional theory. The computations revealed the sources of stereoselectivity, reactivity, and substituent effects both in catalyst and substrates for aldol reactions catalyzed by vicinal diamines. We proposed a stereoselectivity model based on the conformations of cyclooctane that serves as a predictive model for further aldol chemistry, as well as for the design of new reactions. Chapter 3 continues the exploration of vicinal diamine catalysis in the realm of Nazarov chemistry. Density functional theory was used to determine the mechanism, stereoselectivity, and source of product inhibition in Nazarov reactions of ketoenones catalyzed by vicinal diamines. The formation of an enamine-iminium ion was determined, and the stereoselectivity was found to be caused by the cyclohexane conformation formed in the enamine-iminium complex. The dihedral angle of the diamine preferred one helicity of the electrocyclization transition state. Chapter 4 summarizes a collaboration between our group and the research group of Prof. Patrick Harran, where they developed new methods to synthesize macrocyclic pyrroloindolines by alkylating tryptophan-based oligopeptides. Computations were performed to understand the regiodivergent nature of the macrocyclization reactions. We determined that both the endo- and exo-pyrroloindolines form, but the exclusive observation of endo-pyrroloindolines is due to the propensity for the exo-intermediates to rapidly rearrange to thermodynamically preferred C2-linked isomers. In Chapter 5, a collaboration between our group and Prof. Neil Garg's research group on the arylations of chiral enamines with arynes. The Garg lab discovered and developed the synthetic methodology for arylating the alpha position of chiral enamines to form stereodefined quaternary centers. We performed density functional theory calculations to understand the mechanism and source of stereoselectivity in the reaction of benzyne and chiral enamines, as well as predict better-performing substituents. Chapter 6 describes a collaboration between our group and Prof. Karl Anker J rgensen's research group in Aarhus, Denmark. The J rgensen group discovered and developed hetero-[6+4] and [6+2] reactions of heteroaromatic compounds to yield highly complex scaffolds from simple pyrrole aldehydes and olefins. With density functional theory calculations, we determined the nature of the [6+4] and [6+2] reaction mechanisms to be stepwise zwitterionic pathways. The enantio-controlling step was identified as the cyclization step. DFT was used to predict better-performing catalysts for the hetero-[6+2] reaction. In Chapter 7, we describe a collaboration with Prof. Scott Denmark on the Soai reaction. Prof. Denmark's group has discovered a new autocatalytic reaction system where detailed kinetics and mechanistic investigations revealed the intricacies of the autocatalytic Soai mechanism. We performed density functional theory calculations to probe the transition state model of enantioselectivity in the autocatalytic mechanism, and the source of autocatalysis.

Grignard Reagents and Transition Metal Catalysts

Grignard Reagents and Transition Metal Catalysts
Author: Janine Cossy
Publisher: Walter de Gruyter GmbH & Co KG
Total Pages: 416
Release: 2016-04-25
Genre: Science
ISBN: 3110383438

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In 1912, the Chemistry Nobel Prize was awarded for the discovery of the so-called Grignard reagents. Nowadays, many transition metal variants are developed to modify reactivity and selectivity of the C–C bond formation reaction. The Grignard reaction is one of the fundamental organometallic reactions, often used in alcohol syntheses. With transition metals like iron, cobalt and nickel or with noble metals like copper, silver and palladium, modern Grignard reagents can be designed in reactivity, selectivity and functional group tolerance. This book, written by international experts, presents an overview on timely Grignard chemistry involving transition metals.

Oxidative Cross-Coupling Reactions

Oxidative Cross-Coupling Reactions
Author: Aiwen Lei
Publisher: John Wiley & Sons
Total Pages: 243
Release: 2016-11-14
Genre: Technology & Engineering
ISBN: 3527336885

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The first handbook on this emerging field provides a comprehensive overview of transition metal-catalyzed coupling reactions in the presence of an oxidant. Following an introduction to the general concept and mechanism of this reaction class, the team of authors presents chapters on C-C cross-coupling reactions using organometallic partners, C-Heteroatom bond forming reactions via oxidative couplings, and C-H couplings via C-H activation. The text also covers such groundbreaking topics as recent achievements in the fields of C-C and C-X bond formation reactions as well as C-H activation involving oxidative couplings. With its novel and concise approach towards important building blocks in organic chemistry and its focus on synthetic applications, this handbook is of great interest to all synthetic chemists in academia and industry alike.