The Development of Hybrid Antigene Therapeutics Using Nucleic Acid Click Chemistry

The Development of Hybrid Antigene Therapeutics Using Nucleic Acid Click Chemistry
Author: Teresa Lauria
Publisher:
Total Pages: 0
Release: 2020
Genre:
ISBN:

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Given their ability to break single- and double-strand DNA with high selectivity, the design of restriction endonuclease mimics has become an area of considerable research interest. One class of mimetics are copper artificial metallo-nucleases (AMNs) that prompt direct strand scission by oxidatively damaging duplex DNA. Therefore, the formation of metal-catalysed free radicals in the vicinity of nucleic acids provides a viable route to developing artificial gene editing tools. The aim of this research was to develop new copper-based AMNs for selective knockdown of the green fluorescent protein (GFP) gene. To achieve this, a novel pool of gene-targeted biomaterials was developed by hybridising intercalating azide-modified phenanthrene AMNs to triplex formation oligonucleotides (TFOs) using copper-catalysed alkyne-azide cycloaddition (CuAAC) 'click' chemistry. Upon isolating the family of AMN-TFO hybrids, the project focused on their triplex formation and stabilisation properties. In the presence of coordinated copper(II) ions and a reductant, AMN-TFOs selectively cleaved the GFP gene fragment and site-specific fragmentation patterns were identified using fluorophore-tagged sequences. Building on this first generation of hybrid AMNs, second generation hybrids were developed by clicking di-copper binding bis-phenanthroline ligands to alkyneTFOs. These di-copper(II) AMN-TFOs were prepared using both CuAAC and strainpromoted azide-alkyne cycloaddition (SPAAC) reactions and cleavage reactions with a GFP gene fragment were compared to first generation mononuclear AMN-TFO hybrids. The final aspect of this work focused on extending this technology to develop a novel class of luminescent probes. To achieve this, polypyridyl ruthenium(II) complexes bearing an azide-phenanthroline handle were prepared and conjugated to alkyne TFOs and their preliminary GFP-targeting and luminescence properties were identified.

Therapeutic Oligonucleotides

Therapeutic Oligonucleotides
Author: Jens Kurreck
Publisher: Royal Society of Chemistry
Total Pages: 362
Release: 2008
Genre: Medical
ISBN: 0854041168

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This book provides a compelling overall update on current status of RNA interference

Modified Nucleic Acids

Modified Nucleic Acids
Author: Kazuhiko Nakatani
Publisher: Springer
Total Pages: 280
Release: 2016-04-04
Genre: Science
ISBN: 3319271113

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This book spans diverse aspects of modified nucleic acids, from chemical synthesis and spectroscopy to in vivo applications, and highlights studies on chemical modifications of the backbone and nucleobases. Topics discussed include fluorescent pyrimidine and purine analogs, enzymatic approaches to the preparation of modified nucleic acids, emission and electron paramagnetic resonance (EPR) spectroscopy for studying nucleic acid structure and dynamics, non-covalent binding of low- and high-MW ligands to nucleic acids and the design of unnatural base pairs. This unique book addresses new developments and is designed for graduate level and professional research purposes.

Nucleic Acid Aptamers

Nucleic Acid Aptamers
Author: Günter Mayer
Publisher: Humana
Total Pages: 0
Release: 2015-11-10
Genre: Science
ISBN: 9781493931965

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This volume provides protocol references covering recent developments in the aptamer field. Within the last decade, aptamers have become more and more popular, and their sophisticated biophysical properties together with their ability to be easily modified and, thus, adapted to various regimens makes them a very promising class of compounds. Divided into three sections, the book covers selection, a series of analytical methods to assess biophysical properties of aptamer-target interactions, as well as various applications of aptamers. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Practical and easy to follow, Nucleic Acid Aptamers: Selection, Characterization, and Application provides a state-of-the-art summary of recent developments in the aptamer field and will be a helpful resource for scientists in the life sciences working with aptamers as tools to elucidate biological systems.

Protein Self-Assembly

Protein Self-Assembly
Author: Jennifer J. McManus
Publisher: Humana
Total Pages: 266
Release: 2020-08-08
Genre: Science
ISBN: 9781493996803

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This volume explores experimental and computational approaches to measuring the most widely studied protein assemblies, including condensed liquid phases, aggregates, and crystals. The chapters in this book are organized into three parts: Part One looks at the techniques used to measure protein-protein interactions and equilibrium protein phases in dilute and concentrated protein solutions; Part Two describes methods to measure kinetics of aggregation and to characterize the assembled state; and Part Three details several different computational approaches that are currently used to help researchers understand protein self-assembly. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Thorough and cutting-edge, Protein Self-Assembly: Methods and Protocols is a valuable resource for researchers who are interested in learning more about this developing field.

Molecular Biology of The Cell

Molecular Biology of The Cell
Author: Bruce Alberts
Publisher:
Total Pages: 0
Release: 2002
Genre: Cytology
ISBN: 9780815332183

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Bioconjugate Techniques

Bioconjugate Techniques
Author: Greg T. Hermanson
Publisher: Academic Press
Total Pages: 1233
Release: 2010-07-26
Genre: Science
ISBN: 0080568726

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Bioconjugate Techniques, 2nd Edition, is the essential guide to the modification and cross linking of biomolecules for use in research, diagnostics, and therapeutics. It provides highly detailed information on the chemistry, reagent systems, and practical applications for creating labeled or conjugate molecules. It also describes dozens of reactions with details on hundreds of commercially available reagents and the use of these reagents for modifying or cross linking peptides and proteins, sugars and polysaccharides, nucleic acids and oligonucleotides, lipids, and synthetic polymers. A one-stop source for proven methods and protocols for synthesizing bioconjugates in the lab Step-by-step presentation makes the book an ideal source for researchers who are less familiar with the synthesis of bioconjugates More than 600 figures that visually describe the complex reactions associated with the synthesis of bioconjugates Includes entirely new chapters on the latest areas in the field of bioconjugation as follows: Microparticles and nanoparticlesSilane coupling agentsDendrimers and dendronsChemoselective ligationQuantum dotsLanthanide chelatesCyanine dyesDiscrete PEG compoundsBuckyballs,fullerenes, and carbon nanotubesMass tags and isotope tagsBioconjugation in the study of protein interactions

Advanced Healthcare Materials

Advanced Healthcare Materials
Author: Ashutosh Tiwari
Publisher: John Wiley & Sons
Total Pages: 421
Release: 2014-05-09
Genre: Technology & Engineering
ISBN: 1118773683

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Offers a comprehensive and interdisciplinary view of cutting-edge research on advanced materials for healthcare technology and applications Advanced healthcare materials are attracting strong interest in fundamental as well as applied medical science and technology. This book summarizes the current state of knowledge in the field of advanced materials for functional therapeutics, point-of-care diagnostics, translational materials, and up-and-coming bioengineering devices. Advanced Healthcare Materials highlights the key features that enable the design of stimuli-responsive smart nanoparticles, novel biomaterials, and nano/micro devices for either diagnosis or therapy, or both, called theranostics. It also presents the latest advancements in healthcare materials and medical technology. The senior researchers from global knowledge centers have written topics including: State-of-the-art of biomaterials for human health Micro- and nanoparticles and their application in biosensors The role of immunoassays Stimuli-responsive smart nanoparticles Diagnosis and treatment of cancer Advanced materials for biomedical application and drug delivery Nanoparticles for diagnosis and/or treatment of Alzheimers disease Hierarchical modelling of elastic behavior of human dental tissue Biodegradable porous hydrogels Hydrogels in tissue engineering, drug delivery, and wound care Modified natural zeolites Supramolecular hydrogels based on cyclodextrin poly(pseudo)rotaxane Polyhydroxyalkanoate-based biomaterials Biomimetic molecularly imprinted polymers

Nucleic Acid Drugs

Nucleic Acid Drugs
Author: Akira Murakami
Publisher: Springer
Total Pages: 189
Release: 2012-07-04
Genre: Technology & Engineering
ISBN: 364230463X

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New Antisense Strategies: Chemical Synthesis of RNA Oligomers, by Junichi Yano und Gerald E. Smyth Development and Modification of Decoy Oligodeoxynucleotides for Clinical Application, by Mariana Kiomy Osako, Hironori Nakagami und Ryuichi Morishita Modulation of Endosomal Toll-Like Receptor-Mediated Immune Responses by Synthetic Oligonucleotides, by Ekambar R. Kandimalla und Sudhir Agrawal Delivery of Nucleic Acid Drugs, by Yan Lee und Kazunori Kataoka Aptamer: Biology to Applications, by Yoshikazu Nakamura Development and Clinical Applications of Nucleic Acid Therapeutics, by Veenu Aishwarya, Anna Kalota und Alan M. Gewirtz