RNA Trafficking and Nuclear Structure Dynamics

RNA Trafficking and Nuclear Structure Dynamics
Author: Philippe Jeanteur
Publisher: Springer
Total Pages: 161
Release: 2007-11-03
Genre: Science
ISBN: 3540742662

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This volume explores nuclear structure and trafficking involving or relevant to RNA and RNPs. Topics include advances and current problems in the structural organization of different subnuclear compartments, Cajal bodies and gems, speckles containing splicing factors, and PML bodies characteristic of ProMyelocytic leukemia. The book also describes the dynamic aspects of RNA trafficking and the latest technologies for live cell imaging of mRNA.

Structure and Dynamics of RNA

Structure and Dynamics of RNA
Author: P. H. van Knippenberg
Publisher: Springer Science & Business Media
Total Pages: 335
Release: 2013-03-08
Genre: Technology & Engineering
ISBN: 1468451731

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This volume contains contributions from the speakers at the NATO Advanced Research Workshop on "3D 5tructure and Dynamics of RNA", which was held in Renesse, The Netherlands, 21 - 24 August, 1985. Two major developments have determined the progress of nucleic acid research during the last decade. First, manipulation of genetic material by recombinant DNA methodology has enabled detailed studies of the function of nucleic acids in vivo. 5econd, the use of powerful physical methods, such as X-ray diffraction and nuclear magnetic resonance spectroscopy, in the study of biomacromolecules has provided information regarding the structure and the dynamics of nucleic acids. Both developments were enabled by the advance of synthetic methods that allow preparation of nucleic acid molecules of required sequence and length. The basic understanding of nucleic acid function will ultimately depend on a close collaboration between molecular biologists and biophy sicists. In the case of RNA, the ground rules for the formation of secondary structure have been derived from physical studies of oligoribonucleotides. Powerfull spectroscopic techniques have revealed more details of ~~A structure including novel conformations (e.g. left-handed Z-RNA). A wealth of information has been obtained by studying the relatively small transfer RNA molecules. A few of these RNAs have been crystallized, enabling determination of their three-dimensional structure. It has become apparent that "non-classical" basepairing between distal nucleotides gives rise to tertiary interactions, determining the overall shape of the molecule.

Nuclear Pore Complexes and Nucleocytoplasmic Transport - Methods

Nuclear Pore Complexes and Nucleocytoplasmic Transport - Methods
Author:
Publisher: Elsevier
Total Pages: 553
Release: 2014-05-20
Genre: Science
ISBN: 0124171788

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Volume 122 of Methods in Cell Biology describes modern tools and techniques used to study nuclear pore complexes and nucleocytoplasmic transport in diverse eukaryotic model systems (including mammalian cells, Xenopus, C. elegans, yeast). The volume enables investigators to analyze nuclear pore complex structure, assembly, and dynamics; to evaluate protein and RNA trafficking through the nuclear envelope; and to design in vivo or in vitro assays appropriate to their research needs. Beyond the study of nuclear pores and transport as such, these protocols will also be helpful to scientists characterizing gene regulation, signal transduction, cell cycle, viral infections, or aging. The NPC being one of the largest multiprotein complexes in the cell, some protocols will also be of interest for people currently characterizing other macromolecular assemblies. This book is thus designed for laboratory use by graduate students, technicians, and researchers in many molecular and cellular disciplines. Describes modern tools and techniques used to study nuclear pore complexes and nucleocytoplasmic transport in diverse eukaryotic model systems (mammalian cells, Xenopus, C. elegans, yeast) Chapters are written by experts in the field Cutting-edge material

Structure and Dynamics of RNA

Structure and Dynamics of RNA
Author:
Publisher:
Total Pages: 352
Release: 1986-10-31
Genre:
ISBN: 9781468451740

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Single Particle Tracking and Single Molecule Energy Transfer

Single Particle Tracking and Single Molecule Energy Transfer
Author: Christoph Bräuchle
Publisher: John Wiley & Sons
Total Pages: 359
Release: 2009-10-30
Genre: Science
ISBN: 9783527628377

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Closing a gap in the literature, this handbook gathers all the information on single particle tracking and single molecule energy transfer. It covers all aspects of this hot and modern topic, from detecting virus entry to membrane diffusion, and from protein folding using spFRET to coupled dye systems, as well recent achievements in the field. Throughout, the first-class editors and top international authors present content of the highest quality, making this a must-have for physical chemists, spectroscopists, molecular physicists and biochemists.

Single-stranded RNA phages

Single-stranded RNA phages
Author: Paul Pumpens
Publisher: CRC Press
Total Pages: 1832
Release: 2020-02-03
Genre: Science
ISBN: 0429671415

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This is a comprehensive guide to single-stranded RNA phages (family Leviviridae), first discovered in 1961. These phages played a unique role in early studies of molecular biology, the genetic code, translation, replication, suppression of mutations. Special attention is devoted to modern applications of the RNA phages and their products in nanotechnology, vaccinology, gene discovery, evolutionary and environmental studies. Included is an overview of the generation of novel vaccines, gene therapy vectors, drug delivery, and diagnostic tools exploring the role of RNA phage-derived products in the revolutionary progress of the protein tethering and bioimaging protocols. Key Features Presents the first full guide to single-stranded RNA phages Reviews the history of molecular biology summarizing the role RNA phages in the development of the life sciences Demonstrates how RNA phage-derived products have resulted in nanotechnological applications Presents an up-to-date account of the role played by RNA phages in evolutionary and environmental studies

Nucleocytoplasmic Transport

Nucleocytoplasmic Transport
Author: Reiner Peters
Publisher: Springer Science & Business Media
Total Pages: 296
Release: 2012-12-06
Genre: Science
ISBN: 3642715656

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Long Non-Coding RNAs

Long Non-Coding RNAs
Author: Durdica Ugarkovic
Publisher: Springer Science & Business Media
Total Pages: 216
Release: 2011-02-01
Genre: Science
ISBN: 3642165028

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Long non-coding RNAs (lncRNAs), tentatively defined as ncRNAs of more than two hundred nucleotides in length, are characterized by the complexity and diversity of their sequences and mechanisms of action. Based on genome-wide studies, more than 3,300 of them exist, but to date only the limited number of functional lncRNAs have been identified and characterized. Nonetheless, lncRNAs have emerged as key molecules involved in the control of transcriptional and posttranscriptional gene regulatory pathways. They take part in the recruitment of chromatin modifying complexes and regulate splicing, localization, stability and translation of the target mRNAs. This book provides an overview of the rapidly advancing field of long ncRNAs, describing the epigenetic and non-epigenetic mechanisms by which they regulate various biological functions in model systems, from yeast to mammals. The role of ncRNAs in sex chromosome dosage compensation in flies and mammals is described, as well as their role in centromere and telomere biology. Long non-coding RNAs involved in environmental stress response and development are presented and their mechanisms of action discussed.

Viruses and Apoptosis

Viruses and Apoptosis
Author: Covadonga Alonso
Publisher: Springer Science & Business Media
Total Pages: 346
Release: 2013-04-18
Genre: Science
ISBN: 3540742646

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Using different viral models, molecular pathways regulated by viral genes and their role in the pathogenesis of infection are analyzed. The book also offers an update of known signaling pathways in apoptosis and their role in normal and infected cells. Special emphasis is given to molecular pathways underlying viral transformation and oncogenesis and how research in this area is opening opportunities in cancer therapy.

Epigenetics and Chromatin

Epigenetics and Chromatin
Author: Philippe Jeanteur
Publisher: Springer Science & Business Media
Total Pages: 284
Release: 2008-09-10
Genre: Science
ISBN: 9783540852360

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Epigenetics refers to heritable patterns of gene expression which do not depend on alterations of genomic DNA sequence. This book provides a state-of-the-art account of a few selected hot spots by scientists at the edge in this extremely active field. It puts special emphasis on two main streams of research. One is the role of post-translational modifications of proteins, mostly histones, on chromatin structure and accessibility. The other one deals with parental genomic imprinting, a process which allows to express a few selected genes from only one of the parental allele while extinguishing the other.