Oligonucleotide Conjugates in DNA Nanotechnology

Oligonucleotide Conjugates in DNA Nanotechnology
Author: Alexander Prinzen
Publisher:
Total Pages:
Release: 2022
Genre:
ISBN:

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"Oligonucleotides, in the form of DNA and RNA are primarily known as the information and messenger molecules of the cell. Roles beyond this informational molecule have seen oligonucleotides used as structural materials, therapeutics, and molecular recognition components. Combining many of these different roles, the field of DNA nanotechnology has emerged, to generate an unprecedented number of different devices, for applications in sensing, diagnostics, gene silencing and drug delivery. Especially in the case of gene silencing and drug delivery, the biocompatibility, and recognition abilities of DNA place these nanostructures as advantageous carriers for the transport and selective release of these agents. However, by its nature, DNA is chemically inert and to gain more function, chemical modifications are generally needed. This thesis presents new oligonucleotide conjugates used in combination with DNA nanotechnology for the selective delivery/release of both small molecule drugs and antisense oligonucleotides. At first, the evolution of a DNA device that was engineered to selectively amplify the release of small molecule therapeutics, in response to a molecular recognition event is described. A detailed investigation into the design, conjugation chemistry, and kinetics of release are presented. Furthermore, integrating structural DNA nanotechnology and the drug release platform together allows for the generation of well-defined nanostructures which can act as standalone devices without multiple components. Secondly, a new antisense oligonucleotide conjugated with hydrophobic disulfide modifications is generated for their ability to self-assemble into spherical nucleic acids and produce stimuli responsive gene silencing under reducing conditions. The stability of these structures in cellular media and uptake into cells of these structures is thoroughly investigated. Finally, different strategies to improve the drug release device from Chapter 2 for transitioning it into real biological drug delivery applications is developed. Factors such as off-target degradation/activation, delivery to the site of action, rate of metabolism and overall drug specificity are addressed"--

Nucleic Acids Chemistry

Nucleic Acids Chemistry
Author: Ramon Eritja
Publisher: Walter de Gruyter GmbH & Co KG
Total Pages: 516
Release: 2021-01-18
Genre: Science
ISBN: 3110636484

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This book compiles recent research on the modification of nucleic acids. It covers backbone modifications and conjugation of lipids, peptides and proteins to oligonucleotides and their therapeutic use. Synthesis and application in biomedicine and nanotechnology of aptamers, fluorescent and xeno nucleic acids, DNA repair and artificial DNA are discussed as well.

DNA in Supramolecular Chemistry and Nanotechnology

DNA in Supramolecular Chemistry and Nanotechnology
Author: Eugen Stulz
Publisher: John Wiley & Sons
Total Pages: 538
Release: 2015-07-14
Genre: Technology & Engineering
ISBN: 111869693X

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This book covers the emerging topic of DNA nanotechnology and DNA supramolecular chemistry in its broader sense. By taking DNA out of its biological role, this biomolecule has become a very versatile building block in materials chemistry, supramolecular chemistry and bio-nanotechnology. Many novel structures have been realized in the past decade, which are now being used to create molecular machines, drug delivery systems, diagnosis platforms or potential electronic devices. The book combines many aspects of DNA nanotechnology, including formation of functional structures based on covalent and non-covalent systems, DNA origami, DNA based switches, DNA machines, and alternative structures and templates. This broad coverage is very appealing since it combines both the synthesis of modified DNA as well as designer concepts to successfully plan and make DNA nanostructures. Contributing authors have provided first a general introduction for the non-specialist reader, followed by a more in-depth analysis and presentation of their topic. In this way the book is attractive and useful for both the non-specialist who would like to have an overview of the topic, as well as the specialist reader who requires more information and inspiration to foster their own research.

DNA Conjugates and Sensors

DNA Conjugates and Sensors
Author: Keith R Fox
Publisher: Royal Society of Chemistry
Total Pages: 317
Release: 2012-11-30
Genre: Science
ISBN: 1849734933

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Applications of nucleic acids have developed recently to provide solutions for biosensors, diagnostic tools and as platforms for the assembly of complex structures. These developments have been possible as their base sequence can be used to assemble precise structures following simple and predictable rules. Self-assembled DNA can then be amplified using polymerase chain reaction (PCR) and this ultimately enables the preparation of synthetic nucleic acids. Their use as molecular tools or DNA-conjugates has recently been enhanced by the addition of other groups including enzymes, fluorophores and small molecules. Written by leaders in the field, this volume describes the preparation and application of these DNA-conjugates. Several have been used as sensors (aptamers, riboswitches and nanostructures) based on the ability of nucleic acids to adopt specific structures in the presence of ligands, whilst others link reporter groups such as proteins or fluorophores to RNA or DNA for detection, single molecule studies, and increasing the sensitivity of PCR. The book is relevant to researchers in areas related to analytical chemistry, chemical biology, medicinal chemistry, molecular pharmacology, and structural and molecular biology.

Therapeutic Oligonucleotides

Therapeutic Oligonucleotides
Author: Jens Kurreck
Publisher: Royal Society of Chemistry
Total Pages: 362
Release: 2008
Genre: Medical
ISBN: 0854041168

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This book provides a compelling overall update on current status of RNA interference

DNA Nanotechnology

DNA Nanotechnology
Author: Chunhai Fan
Publisher: Springer Nature
Total Pages: 406
Release: 2020-09-07
Genre: Technology & Engineering
ISBN: 3030548066

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The series Topics in Current Chemistry Collections presents critical reviews from the journal Topics in Current Chemistry organized in topical volumes. The scope of coverage is all areas of chemical science including the interfaces with related disciplines such as biology, medicine and materials science. The goal of each thematic volume is to give the non-specialist reader, whether in academia or industry, a comprehensive insight into an area where new research is emerging which is of interest to a larger scientific audience. Each review within the volume critically surveys one aspect of that topic and places it within the context of the volume as a whole. The most significant developments of the last 5 to 10 years are presented using selected examples to illustrate the principles discussed. The coverage is not intended to be an exhaustive summary of the field or include large quantities of data, but should rather be conceptual, concentrating on the methodological thinking that will allow the non-specialist reader to understand the information presented. Contributions also offer an outlook on potential future developments in the field. The chapter "DNA-Programmed Chemical Synthesis of Polymers and Inorganic Nanomaterials" is available open access under a CC BY 4.0 License via link.springer.com.

Templated DNA Nanotechnology

Templated DNA Nanotechnology
Author: Thimmaiah Govindaraju
Publisher: CRC Press
Total Pages: 426
Release: 2019-01-30
Genre: Science
ISBN: 0429767676

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Nucleic acids have structurally evolved over billions of years to effectively store and transfer genetic information. In the 1980s, Nadrian Seeman’s idea of constructing a 3D lattice from DNA led to utilizing DNA as nanomolecular building blocks to create emergent molecular systems and nanomaterial objects. This bottom-up approach to construct nanoscale architectures with DNA marked the beginning of a new field, DNA nanotechnology, contributing significantly to the broad area of nanoscience and nanotechnology. The molecular architectonics of small "designer" molecules and short DNA sequences through complementary binding interaction engenders well-defined functional nanoarchitectures with realistic applications in areas ranging from biology to materials science and is termed "DNA nanoarchitectonics." This book discusses novel approaches adapted by leading researchers from all over the world to create functional nucleic acid molecular systems and nanoarchitectures. Individual chapters contributed by active practitioners provide fundamental and advanced knowledge emanated from their own and others’ work. Each chapter includes numerous illustrations, historical perspectives, case studies and practical examples, critical discussions, and future prospects. This book can serve as a practical handbook or as a textbook for advanced undergraduate- and graduate-level students of nanotechnology and DNA nanotechnology, supramolecular chemistry, and nanoarchitectonics and researchers working on macromolecular science, nanotechnology, chemistry, biology, and medicine, especially those with an interest in sensors, biosensors, nanoswitches and nanodevices, diagnostics, drug delivery, and therapeutics.

Oligonucleotide Synthesis

Oligonucleotide Synthesis
Author: Piet Herdewijn
Publisher: Springer Science & Business Media
Total Pages: 436
Release: 2008-02-04
Genre: Medical
ISBN: 1592598234

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A collection of powerful new techniques for oligonucleotide synthesis and for the use of modified oligonucleotides in biotechnology. Among the protocol highlights are a novel two-step process that yields a high purity, less costly, DNA, the synthesis of phosphorothioates using new sulfur transfer agents, the synthesis of LNA, peptide conjugation methods to improve cellular delivery and cell-specific targeting, and triple helix formation. The applications include using molecular beacons to monitor the PCR amplification process, nuclease footprinting to study the sequence-selective binding of small molecules of DNA, nucleic acid libraries, and the use of small interference RNA (siRNA) as an inhibitor of gene expression.

Structural DNA Nanotechnology

Structural DNA Nanotechnology
Author: Nadrian C. Seeman
Publisher: Cambridge University Press
Total Pages: 269
Release: 2015
Genre: Computers
ISBN: 0521764483

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Written by the founder of the field, this is a comprehensive and accessible introduction to structural DNA nanotechnology.

Dna Nanotechnology For Bioanalysis: From Hybrid Dna Nanostructures To Functional Devices

Dna Nanotechnology For Bioanalysis: From Hybrid Dna Nanostructures To Functional Devices
Author: Giuseppe Domenico Arrabito
Publisher: World Scientific
Total Pages: 216
Release: 2017-09-25
Genre: Science
ISBN: 1786343819

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This book is intended for non-specialists and students, presenting a unique introduction to the field of DNA nanotechnology. The primary focus is on the extraordinary advantages of specificity and sensitivity obtained by integrating DNA nanostructures in bioanalytical devices.DNA Nanotechnology for Bioanalysis provides a concise and rigorous description for the fabrication of various types of functional nanostructures by optimized software-aided high-yield synthesis. Following this is the explanation of methods to decorate these nanostructures with molecules such as proteins, metal nanoparticles or bioorganic moieties covalently bonded onto DNA via self-assemblage processes. Also provided is a concise review on non-canonical DNA structures (such as G-quadruplexes) and their targeting by small molecules for applications in pharmacology. Finally, it describes the exciting applications of DNA nanostructures in life sciences and nanomedicine, including ultraspecific molecular delivery, control of cell behavior, analysis of cell lysate and DNA-based nano-tools for super-resolution sub-cellular imaging.