Hands on Data Science for Biologists Using Python

Hands on Data Science for Biologists Using Python
Author: Yasha Hasija
Publisher: CRC Press
Total Pages: 299
Release: 2021-04-08
Genre: Computers
ISBN: 1000345483

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Hands-on Data Science for Biologists using Python has been conceptualized to address the massive data handling needs of modern-day biologists. With the advent of high throughput technologies and consequent availability of omics data, biological science has become a data-intensive field. This hands-on textbook has been written with the inception of easing data analysis by providing an interactive, problem-based instructional approach in Python programming language. The book starts with an introduction to Python and steadily delves into scrupulous techniques of data handling, preprocessing, and visualization. The book concludes with machine learning algorithms and their applications in biological data science. Each topic has an intuitive explanation of concepts and is accompanied with biological examples. Features of this book: The book contains standard templates for data analysis using Python, suitable for beginners as well as advanced learners. This book shows working implementations of data handling and machine learning algorithms using real-life biological datasets and problems, such as gene expression analysis; disease prediction; image recognition; SNP association with phenotypes and diseases. Considering the importance of visualization for data interpretation, especially in biological systems, there is a dedicated chapter for the ease of data visualization and plotting. Every chapter is designed to be interactive and is accompanied with Jupyter notebook to prompt readers to practice in their local systems. Other avant-garde component of the book is the inclusion of a machine learning project, wherein various machine learning algorithms are applied for the identification of genes associated with age-related disorders. A systematic understanding of data analysis steps has always been an important element for biological research. This book is a readily accessible resource that can be used as a handbook for data analysis, as well as a platter of standard code templates for building models.

Hands on Data Science for Biologists Using Python

Hands on Data Science for Biologists Using Python
Author: Yasha Hasija
Publisher: CRC Press
Total Pages: 243
Release: 2021-04-09
Genre: Science
ISBN: 1000345505

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Hands-on Data Science for Biologists using Python has been conceptualized to address the massive data handling needs of modern-day biologists. With the advent of high throughput technologies and consequent availability of omics data, biological science has become a data-intensive field. This hands-on textbook has been written with the inception of easing data analysis by providing an interactive, problem-based instructional approach in Python programming language. The book starts with an introduction to Python and steadily delves into scrupulous techniques of data handling, preprocessing, and visualization. The book concludes with machine learning algorithms and their applications in biological data science. Each topic has an intuitive explanation of concepts and is accompanied with biological examples. Features of this book: The book contains standard templates for data analysis using Python, suitable for beginners as well as advanced learners. This book shows working implementations of data handling and machine learning algorithms using real-life biological datasets and problems, such as gene expression analysis; disease prediction; image recognition; SNP association with phenotypes and diseases. Considering the importance of visualization for data interpretation, especially in biological systems, there is a dedicated chapter for the ease of data visualization and plotting. Every chapter is designed to be interactive and is accompanied with Jupyter notebook to prompt readers to practice in their local systems. Other avant-garde component of the book is the inclusion of a machine learning project, wherein various machine learning algorithms are applied for the identification of genes associated with age-related disorders. A systematic understanding of data analysis steps has always been an important element for biological research. This book is a readily accessible resource that can be used as a handbook for data analysis, as well as a platter of standard code templates for building models.

Hands-On Data Science and Python Machine Learning

Hands-On Data Science and Python Machine Learning
Author: Frank Kane
Publisher: Packt Publishing Ltd
Total Pages: 415
Release: 2017-07-31
Genre: Computers
ISBN: 1787280225

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This book covers the fundamentals of machine learning with Python in a concise and dynamic manner. It covers data mining and large-scale machine learning using Apache Spark. About This Book Take your first steps in the world of data science by understanding the tools and techniques of data analysis Train efficient Machine Learning models in Python using the supervised and unsupervised learning methods Learn how to use Apache Spark for processing Big Data efficiently Who This Book Is For If you are a budding data scientist or a data analyst who wants to analyze and gain actionable insights from data using Python, this book is for you. Programmers with some experience in Python who want to enter the lucrative world of Data Science will also find this book to be very useful, but you don't need to be an expert Python coder or mathematician to get the most from this book. What You Will Learn Learn how to clean your data and ready it for analysis Implement the popular clustering and regression methods in Python Train efficient machine learning models using decision trees and random forests Visualize the results of your analysis using Python's Matplotlib library Use Apache Spark's MLlib package to perform machine learning on large datasets In Detail Join Frank Kane, who worked on Amazon and IMDb's machine learning algorithms, as he guides you on your first steps into the world of data science. Hands-On Data Science and Python Machine Learning gives you the tools that you need to understand and explore the core topics in the field, and the confidence and practice to build and analyze your own machine learning models. With the help of interesting and easy-to-follow practical examples, Frank Kane explains potentially complex topics such as Bayesian methods and K-means clustering in a way that anybody can understand them. Based on Frank's successful data science course, Hands-On Data Science and Python Machine Learning empowers you to conduct data analysis and perform efficient machine learning using Python. Let Frank help you unearth the value in your data using the various data mining and data analysis techniques available in Python, and to develop efficient predictive models to predict future results. You will also learn how to perform large-scale machine learning on Big Data using Apache Spark. The book covers preparing your data for analysis, training machine learning models, and visualizing the final data analysis. Style and approach This comprehensive book is a perfect blend of theory and hands-on code examples in Python which can be used for your reference at any time.

Introduction to Data Science

Introduction to Data Science
Author: Laura Igual
Publisher: Springer
Total Pages: 227
Release: 2017-02-22
Genre: Computers
ISBN: 3319500171

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This accessible and classroom-tested textbook/reference presents an introduction to the fundamentals of the emerging and interdisciplinary field of data science. The coverage spans key concepts adopted from statistics and machine learning, useful techniques for graph analysis and parallel programming, and the practical application of data science for such tasks as building recommender systems or performing sentiment analysis. Topics and features: provides numerous practical case studies using real-world data throughout the book; supports understanding through hands-on experience of solving data science problems using Python; describes techniques and tools for statistical analysis, machine learning, graph analysis, and parallel programming; reviews a range of applications of data science, including recommender systems and sentiment analysis of text data; provides supplementary code resources and data at an associated website.

Data Science Using Python and R

Data Science Using Python and R
Author: Chantal D. Larose
Publisher: John Wiley & Sons
Total Pages: 256
Release: 2019-04-09
Genre: Computers
ISBN: 1119526817

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Learn data science by doing data science! Data Science Using Python and R will get you plugged into the world’s two most widespread open-source platforms for data science: Python and R. Data science is hot. Bloomberg called data scientist “the hottest job in America.” Python and R are the top two open-source data science tools in the world. In Data Science Using Python and R, you will learn step-by-step how to produce hands-on solutions to real-world business problems, using state-of-the-art techniques. Data Science Using Python and R is written for the general reader with no previous analytics or programming experience. An entire chapter is dedicated to learning the basics of Python and R. Then, each chapter presents step-by-step instructions and walkthroughs for solving data science problems using Python and R. Those with analytics experience will appreciate having a one-stop shop for learning how to do data science using Python and R. Topics covered include data preparation, exploratory data analysis, preparing to model the data, decision trees, model evaluation, misclassification costs, naïve Bayes classification, neural networks, clustering, regression modeling, dimension reduction, and association rules mining. Further, exciting new topics such as random forests and general linear models are also included. The book emphasizes data-driven error costs to enhance profitability, which avoids the common pitfalls that may cost a company millions of dollars. Data Science Using Python and R provides exercises at the end of every chapter, totaling over 500 exercises in the book. Readers will therefore have plenty of opportunity to test their newfound data science skills and expertise. In the Hands-on Analysis exercises, readers are challenged to solve interesting business problems using real-world data sets.

Practical Data Science with Python

Practical Data Science with Python
Author: Nathan George
Publisher: Packt Publishing Ltd
Total Pages: 621
Release: 2021-09-30
Genre: Computers
ISBN: 1801076650

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Learn to effectively manage data and execute data science projects from start to finish using Python Key FeaturesUnderstand and utilize data science tools in Python, such as specialized machine learning algorithms and statistical modelingBuild a strong data science foundation with the best data science tools available in PythonAdd value to yourself, your organization, and society by extracting actionable insights from raw dataBook Description Practical Data Science with Python teaches you core data science concepts, with real-world and realistic examples, and strengthens your grip on the basic as well as advanced principles of data preparation and storage, statistics, probability theory, machine learning, and Python programming, helping you build a solid foundation to gain proficiency in data science. The book starts with an overview of basic Python skills and then introduces foundational data science techniques, followed by a thorough explanation of the Python code needed to execute the techniques. You'll understand the code by working through the examples. The code has been broken down into small chunks (a few lines or a function at a time) to enable thorough discussion. As you progress, you will learn how to perform data analysis while exploring the functionalities of key data science Python packages, including pandas, SciPy, and scikit-learn. Finally, the book covers ethics and privacy concerns in data science and suggests resources for improving data science skills, as well as ways to stay up to date on new data science developments. By the end of the book, you should be able to comfortably use Python for basic data science projects and should have the skills to execute the data science process on any data source. What you will learnUse Python data science packages effectivelyClean and prepare data for data science work, including feature engineering and feature selectionData modeling, including classic statistical models (such as t-tests), and essential machine learning algorithms, such as random forests and boosted modelsEvaluate model performanceCompare and understand different machine learning methodsInteract with Excel spreadsheets through PythonCreate automated data science reports through PythonGet to grips with text analytics techniquesWho this book is for The book is intended for beginners, including students starting or about to start a data science, analytics, or related program (e.g. Bachelor’s, Master’s, bootcamp, online courses), recent college graduates who want to learn new skills to set them apart in the job market, professionals who want to learn hands-on data science techniques in Python, and those who want to shift their career to data science. The book requires basic familiarity with Python. A "getting started with Python" section has been included to get complete novices up to speed.

Data Science Projects with Python

Data Science Projects with Python
Author: Stephen Klosterman
Publisher: Packt Publishing Ltd
Total Pages: 374
Release: 2019-04-30
Genre: Computers
ISBN: 183855260X

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Gain hands-on experience with industry-standard data analysis and machine learning tools in Python Key FeaturesTackle data science problems by identifying the problem to be solvedIllustrate patterns in data using appropriate visualizationsImplement suitable machine learning algorithms to gain insights from dataBook Description Data Science Projects with Python is designed to give you practical guidance on industry-standard data analysis and machine learning tools, by applying them to realistic data problems. You will learn how to use pandas and Matplotlib to critically examine datasets with summary statistics and graphs, and extract the insights you seek to derive. You will build your knowledge as you prepare data using the scikit-learn package and feed it to machine learning algorithms such as regularized logistic regression and random forest. You’ll discover how to tune algorithms to provide the most accurate predictions on new and unseen data. As you progress, you’ll gain insights into the working and output of these algorithms, building your understanding of both the predictive capabilities of the models and why they make these predictions. By then end of this book, you will have the necessary skills to confidently use machine learning algorithms to perform detailed data analysis and extract meaningful insights from unstructured data. What you will learnInstall the required packages to set up a data science coding environmentLoad data into a Jupyter notebook running PythonUse Matplotlib to create data visualizationsFit machine learning models using scikit-learnUse lasso and ridge regression to regularize your modelsCompare performance between models to find the best outcomesUse k-fold cross-validation to select model hyperparametersWho this book is for If you are a data analyst, data scientist, or business analyst who wants to get started using Python and machine learning techniques to analyze data and predict outcomes, this book is for you. Basic knowledge of Python and data analytics will help you get the most from this book. Familiarity with mathematical concepts such as algebra and basic statistics will also be useful.

Managing Your Biological Data with Python

Managing Your Biological Data with Python
Author: Allegra Via
Publisher: Chapman and Hall/CRC
Total Pages: 560
Release: 2014
Genre: NATURE
ISBN: 9780429184987

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Take Control of Your Data and Use Python with Confidence Requiring no prior programming experience, Managing Your Biological Data with Python empowers biologists and other life scientists to work with biological data on their own using the Python language. The book teaches them not only how to program but also how to manage their data. It shows how to read data from files in different formats, analyze and manipulate the data, and write the results to a file or computer screen.

Data Science Projects with Python

Data Science Projects with Python
Author: Stephen Klosterman
Publisher: Packt Publishing Ltd
Total Pages: 433
Release: 2021-07-29
Genre: Computers
ISBN: 1800569440

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Gain hands-on experience of Python programming with industry-standard machine learning techniques using pandas, scikit-learn, and XGBoost Key FeaturesThink critically about data and use it to form and test a hypothesisChoose an appropriate machine learning model and train it on your dataCommunicate data-driven insights with confidence and clarityBook Description If data is the new oil, then machine learning is the drill. As companies gain access to ever-increasing quantities of raw data, the ability to deliver state-of-the-art predictive models that support business decision-making becomes more and more valuable. In this book, you'll work on an end-to-end project based around a realistic data set and split up into bite-sized practical exercises. This creates a case-study approach that simulates the working conditions you'll experience in real-world data science projects. You'll learn how to use key Python packages, including pandas, Matplotlib, and scikit-learn, and master the process of data exploration and data processing, before moving on to fitting, evaluating, and tuning algorithms such as regularized logistic regression and random forest. Now in its second edition, this book will take you through the end-to-end process of exploring data and delivering machine learning models. Updated for 2021, this edition includes brand new content on XGBoost, SHAP values, algorithmic fairness, and the ethical concerns of deploying a model in the real world. By the end of this data science book, you'll have the skills, understanding, and confidence to build your own machine learning models and gain insights from real data. What you will learnLoad, explore, and process data using the pandas Python packageUse Matplotlib to create compelling data visualizationsImplement predictive machine learning models with scikit-learnUse lasso and ridge regression to reduce model overfittingEvaluate random forest and logistic regression model performanceDeliver business insights by presenting clear, convincing conclusionsWho this book is for Data Science Projects with Python – Second Edition is for anyone who wants to get started with data science and machine learning. If you're keen to advance your career by using data analysis and predictive modeling to generate business insights, then this book is the perfect place to begin. To quickly grasp the concepts covered, it is recommended that you have basic experience of programming with Python or another similar language, and a general interest in statistics.

Bioinformatics Programming Using Python

Bioinformatics Programming Using Python
Author: Mitchell L Model
Publisher: "O'Reilly Media, Inc."
Total Pages: 526
Release: 2009-12-08
Genre: Science
ISBN: 1449382908

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Powerful, flexible, and easy to use, Python is an ideal language for building software tools and applications for life science research and development. This unique book shows you how to program with Python, using code examples taken directly from bioinformatics. In a short time, you'll be using sophisticated techniques and Python modules that are particularly effective for bioinformatics programming. Bioinformatics Programming Using Python is perfect for anyone involved with bioinformatics -- researchers, support staff, students, and software developers interested in writing bioinformatics applications. You'll find it useful whether you already use Python, write code in another language, or have no programming experience at all. It's an excellent self-instruction tool, as well as a handy reference when facing the challenges of real-life programming tasks. Become familiar with Python's fundamentals, including ways to develop simple applications Learn how to use Python modules for pattern matching, structured text processing, online data retrieval, and database access Discover generalized patterns that cover a large proportion of how Python code is used in bioinformatics Learn how to apply the principles and techniques of object-oriented programming Benefit from the "tips and traps" section in each chapter