Cellular Automata and Complex Systems: Methods for Modeling Biological Phenomena

Cellular Automata and Complex Systems: Methods for Modeling Biological Phenomena
Author: Bilotta, Eleonora
Publisher: IGI Global
Total Pages: 502
Release: 2010-06-30
Genre: Education
ISBN: 1615207880

Download Cellular Automata and Complex Systems: Methods for Modeling Biological Phenomena Book in PDF, Epub and Kindle

"The theme of this book is the use of Cellular Automatas (CAs) to model biological systems, describing 2-D CAs to create populations of "life-like agents" with their own genomes"--Provided by publisher.

Cellular Automaton Modeling of Biological Pattern Formation

Cellular Automaton Modeling of Biological Pattern Formation
Author: Andreas Deutsch
Publisher: Springer Science & Business Media
Total Pages: 331
Release: 2007-12-26
Genre: Science
ISBN: 0817644156

Download Cellular Automaton Modeling of Biological Pattern Formation Book in PDF, Epub and Kindle

This book focuses on a challenging application field of cellular automata: pattern formation in biological systems, such as the growth of microorganisms, dynamics of cellular tissue and tumors, and formation of pigment cell patterns. These phenomena, resulting from complex cellular interactions, cannot be deduced solely from experimental analysis, but can be more easily examined using mathematical models, in particular, cellular automaton models. While there are various books treating cellular automaton modeling, this interdisciplinary work is the first one covering biological applications. The book is aimed at researchers, practitioners, and students in applied mathematics, mathematical biology, computational physics, bioengineering, and computer science interested in a cellular automaton approach to biological modeling.

Simulating Complex Systems by Cellular Automata

Simulating Complex Systems by Cellular Automata
Author: Alfons G. Hoekstra
Publisher: Springer Science & Business Media
Total Pages: 392
Release: 2010-06-13
Genre: Computers
ISBN: 3642122027

Download Simulating Complex Systems by Cellular Automata Book in PDF, Epub and Kindle

Deeply rooted in fundamental research in Mathematics and Computer Science, Cellular Automata (CA) are recognized as an intuitive modeling paradigm for Complex Systems. Already very basic CA, with extremely simple micro dynamics such as the Game of Life, show an almost endless display of complex emergent behavior. Conversely, CA can also be designed to produce a desired emergent behavior, using either theoretical methodologies or evolutionary techniques. Meanwhile, beyond the original realm of applications - Physics, Computer Science, and Mathematics – CA have also become work horses in very different disciplines such as epidemiology, immunology, sociology, and finance. In this context of fast and impressive progress, spurred further by the enormous attraction these topics have on students, this book emerges as a welcome overview of the field for its practitioners, as well as a good starting point for detailed study on the graduate and post-graduate level. The book contains three parts, two major parts on theory and applications, and a smaller part on software. The theory part contains fundamental chapters on how to design and/or apply CA for many different areas. In the applications part a number of representative examples of really using CA in a broad range of disciplines is provided - this part will give the reader a good idea of the real strength of this kind of modeling as well as the incentive to apply CA in their own field of study. Finally, we included a smaller section on software, to highlight the important work that has been done to create high quality problem solving environments that allow to quickly and relatively easily implement a CA model and run simulations, both on the desktop and if needed, on High Performance Computing infrastructures.

Modeling Chemical Systems using Cellular Automata

Modeling Chemical Systems using Cellular Automata
Author: Lemont B. Kier
Publisher: Springer Science & Business Media
Total Pages: 177
Release: 2006-02-23
Genre: Science
ISBN: 1402036906

Download Modeling Chemical Systems using Cellular Automata Book in PDF, Epub and Kindle

Modeling Chemical Systems using Cellular Automata provides a practical introduction to an exciting modeling paradigm for complex systems. The book first discusses the nature of scientific inquiry using models and simulations, and then describes the nature of cellular automata models. It then gives detailed descriptions, with examples and exercises, of how cellular automata models can be used in the study of a wide variety chemical, physical, and biochemical phenomena. Topics covered include models of water itself, solution phenomena, solution interactions with stationary systems, first- and second-order kinetic phenomena, enzyme kinetics, vapor-liquid equilibrium, and atomic and molecular excited-state kinetics. The student experiences these systems through hands-on examples and guided studies. This book is the first of its kind: a textbook and a laboratory manual about cellular automata modeling of common systems in chemistry. The book is designed to be used as a text in undergraduate courses dealing with complex systems and/or as a computational supplement to laboratory courses taught at the undergraduate level. The book includes: - Compact descriptions of a large variety of physical and chemical phenomena - Illustrative examples of simulations, with exercises for further study - An instructor's manual for use of the program The book will be of great value in undergraduate courses in chemistry, physics, biology, applied mathematics, and bioinformatics, and as a supplement for laboratory courses in introductory chemistry, organic chemistry, physical chemistry, medicinal chemistry, chemical engineering and other courses dealing with statistical and dynamic systems. It allows the exploration of a wide range of dynamic phenomena, many of which are not normally accessible within conventional laboratory settings due to limitations of time, cost, and experimental equipment. The book is both a textbook on applied Cellular Automata and a lab manual for chemistry (physics, engineering) courses with lab activity. It would supplement other lab work and be an additonal book the students would use in the course. The authors have assessed the emerging need for this kind of activity in science labs because of the cost of the practical activitites and the frequent failure of some exercises leading to lost didactic value of some experiments. This book is pioneering an alternative that will grow in use. There are no course directors who would use Cellular Automata exclusively. The authors see an emerging interest in this kind of work in courses that contain lab exercises. One such course is the graduate course that Lemont Kier gives in Life Sciences about complexity. He uses many examples and studies from Cellular Automata in the latter part of this course.

New Methods and Paradigms for Modeling Dynamic Processes Based on Cellular Automata

New Methods and Paradigms for Modeling Dynamic Processes Based on Cellular Automata
Author: Bilan, Stepan Mykolayovych
Publisher: IGI Global
Total Pages: 326
Release: 2020-10-16
Genre: Computers
ISBN: 1799826511

Download New Methods and Paradigms for Modeling Dynamic Processes Based on Cellular Automata Book in PDF, Epub and Kindle

The accelerating development of computer technology and communications can replace many of the functions of human intellectual activity, as well as help them in making decisions in various situations of their lives. To implement intelligent functions for various purposes, numerous models, paradigms, architectures, and hardware and software are being developed. Because the world is constantly evolving, there is a need to constantly study various dynamic processes to determine possible negative situations that can lead to undesirable catastrophic phenomena and changes. Recently, more attention has been paid to the study of natural processes in nature. Scientific works are appearing that describe the behavior and development of living organisms and the processes of their interaction. Cellular automata are increasingly used to describe and model them. New Methods and Paradigms for Modeling Dynamic Processes Based on Cellular Automata is a collection of innovative research that describes the models and paradigms of building cellular automata that allows for the simulation of the dynamics of the interaction of living organisms from a different scientific point of view. For this, asynchronous cellular automata with a dynamically changing number of “living” cells are used. The chapters describe the theoretical concepts of constructing asynchronous cellular automata with active cells. Much attention is paid to the use of the proposed theoretical principles for solving modeling problems and solving specific applied problems of forming pseudorandom sequences and image processing based on modeling of the human visual channel. Featuring research on topics such as colony interaction, image processing and recognition, and influence mode, this book is ideally designed for engineers, programmers, software developers, researchers, academicians, and students.

Cellular Automaton Modeling of Biological Pattern Formation

Cellular Automaton Modeling of Biological Pattern Formation
Author: Andreas Deutsch
Publisher: Birkhäuser
Total Pages: 470
Release: 2018-03-09
Genre: Mathematics
ISBN: 1489979808

Download Cellular Automaton Modeling of Biological Pattern Formation Book in PDF, Epub and Kindle

This text explores the use of cellular automata in modeling pattern formation in biological systems. It describes several mathematical modeling approaches utilizing cellular automata that can be used to study the dynamics of interacting cell systems both in simulation and in practice. New in this edition are chapters covering cell migration, tissue development, and cancer dynamics, as well as updated references and new research topic suggestions that reflect the rapid development of the field. The book begins with an introduction to pattern-forming principles in biology and the various mathematical modeling techniques that can be used to analyze them. Cellular automaton models are then discussed in detail for different types of cellular processes and interactions, including random movement, cell migration, adhesive cell interaction, alignment and cellular swarming, growth processes, pigment cell pattern formation, tissue development, tumor growth and invasion, and Turing-type patterns and excitable media. In the final chapter, the authors critically discuss possibilities and limitations of the cellular automaton approach in modeling various biological applications, along with future research directions. Suggestions for research projects are provided throughout the book to encourage additional engagement with the material, and an accompanying simulator is available for readers to perform their own simulations on several of the models covered in the text. QR codes are included within the text for easy access to the simulator. With its accessible presentation and interdisciplinary approach, Cellular Automaton Modeling of Biological Pattern Formation is suitable for graduate and advanced undergraduate students in mathematical biology, biological modeling, and biological computing. It will also be a valuable resource for researchers and practitioners in applied mathematics, mathematical biology, computational physics, bioengineering, and computer science. PRAISE FOR THE FIRST EDITION “An ideal guide for someone with a mathematical or physical background to start exploring biological modelling. Importantly, it will also serve as an excellent guide for experienced modellers to innovate and improve their methodologies for analysing simulation results.” —Mathematical Reviews

Complex Systems

Complex Systems
Author: David G. Green
Publisher:
Total Pages: 404
Release: 1993
Genre: Biological systems
ISBN:

Download Complex Systems Book in PDF, Epub and Kindle

Theory of Practical Cellular Automaton

Theory of Practical Cellular Automaton
Author: Xuewei Li
Publisher: Springer
Total Pages: 361
Release: 2018-05-17
Genre: Business & Economics
ISBN: 9811074976

Download Theory of Practical Cellular Automaton Book in PDF, Epub and Kindle

This book addresses the intellectual foundations, function, modeling approaches and complexity of cellular automata; explores cellular automata in combination with genetic algorithms, neural networks and agents; and discusses the applications of cellular automata in economics, traffic and the spread of disease. Pursuing a blended approach between knowledge and philosophy, it assigns equal value to methods and applications.

Solvable Cellular Automata

Solvable Cellular Automata
Author: Henryk Fukś
Publisher: Springer Nature
Total Pages: 304
Release: 2023-10-09
Genre: Science
ISBN: 3031387007

Download Solvable Cellular Automata Book in PDF, Epub and Kindle

The main focus of the book is solvability of cellular automata, that is, expressing the state of a given cell after a given number of steps by an explicit formula. The author considers solutions of two types of initial value problems for cellular automata, the deterministic one and the probabilistic one. In the first chapter the basic concepts of cellular automata theory are introduced. Deterministic initial value problem is introduced next and solutions for selected simple rules are also presented. In the following chapters various techniques for solving the deterministic problem are introduced, using elementary CA rules of increasing complexity as examples. The second part of the book introduces the concept of probability measure in the context of cellular automata and the probabilistic initial value problem for both deterministic and probabilistic rules. The book is amply illustrated with examples and applications such as the density classification problem, phase transitions in traffic models or the diffusion of innovations model. In the appendix, solution formulae (both deterministic and probabilistic) for over 60 elementary cellular automata rules are listed. Ruelle-Frobenius-Perron equations for all 88 minimal elementary cellular automata are also provided.

Computational Modeling of Biochemical Systems Using Cellular Automata

Computational Modeling of Biochemical Systems Using Cellular Automata
Author: Advait Ashok Apte
Publisher:
Total Pages:
Release: 2010
Genre: Biological systems
ISBN:

Download Computational Modeling of Biochemical Systems Using Cellular Automata Book in PDF, Epub and Kindle

Biological systems exhibit complex behaviors through coordinated responses of individual biological components. With the advent of genome-scale techniques, one focus has been to develop methods to model interactions between components to accurately describe intact system function. Mathematical modeling techniques such as constraint-based modeling, agent-based modeling, cellular automata (CA) modeling and differential equation modeling are employed as computational tools to study biological phenomenon. We have shown that cellular automata simulations can be used as a computational tool for 12 predicting the dynamics of biological systems with stochastic behavior. The basic premise for the research was the observations made during a study of biologically important feed-forward motifs where CA simulations were compared with differential equation simulations. It was shown for classes of structural motifs with feed-forward architecture that network topology affects the overall rate of a process in a quantitatively predictable manner. The study which comprised of CA simulations compared with differential equation modeling show reasonable agreement in the predictability of system dynamics, which provided enough support to model biological systems at cellular level to observe dynamic system evolution. The great promise shown by CA simulations to model biochemical systems was then employed to elucidate evolutionary clues as to why biological networks show preference for certain types of motifs and preserve them with higher frequency during evolution. It was followed by modeling apoptotic networks to shed light on the efficacy of inhibitors and to model cellulose hydrolysis to evaluate efficiency of different enzyme systems used by cellulytic bacteria.