Building Ontologies with Basic Formal Ontology

Building Ontologies with Basic Formal Ontology
Author: Robert Arp
Publisher: MIT Press
Total Pages: 245
Release: 2015-08-28
Genre: Science
ISBN: 026232959X
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An introduction to the field of applied ontology with examples derived particularly from biomedicine, covering theoretical components, design practices, and practical applications. In the era of “big data,” science is increasingly information driven, and the potential for computers to store, manage, and integrate massive amounts of data has given rise to such new disciplinary fields as biomedical informatics. Applied ontology offers a strategy for the organization of scientific information in computer-tractable form, drawing on concepts not only from computer and information science but also from linguistics, logic, and philosophy. This book provides an introduction to the field of applied ontology that is of particular relevance to biomedicine, covering theoretical components of ontologies, best practices for ontology design, and examples of biomedical ontologies in use. After defining an ontology as a representation of the types of entities in a given domain, the book distinguishes between different kinds of ontologies and taxonomies, and shows how applied ontology draws on more traditional ideas from metaphysics. It presents the core features of the Basic Formal Ontology (BFO), now used by over one hundred ontology projects around the world, and offers examples of domain ontologies that utilize BFO. The book also describes Web Ontology Language (OWL), a common framework for Semantic Web technologies. Throughout, the book provides concrete recommendations for the design and construction of domain ontologies.

Building Ontologies with Basic Formal Ontology

Building Ontologies with Basic Formal Ontology
Author: Robert Arp
Publisher: MIT Press
Total Pages: 245
Release: 2015-07-31
Genre: Science
ISBN: 0262527812
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An introduction to the field of applied ontology with examples derived particularly from biomedicine, covering theoretical components, design practices, and practical applications. In the era of “big data,” science is increasingly information driven, and the potential for computers to store, manage, and integrate massive amounts of data has given rise to such new disciplinary fields as biomedical informatics. Applied ontology offers a strategy for the organization of scientific information in computer-tractable form, drawing on concepts not only from computer and information science but also from linguistics, logic, and philosophy. This book provides an introduction to the field of applied ontology that is of particular relevance to biomedicine, covering theoretical components of ontologies, best practices for ontology design, and examples of biomedical ontologies in use. After defining an ontology as a representation of the types of entities in a given domain, the book distinguishes between different kinds of ontologies and taxonomies, and shows how applied ontology draws on more traditional ideas from metaphysics. It presents the core features of the Basic Formal Ontology (BFO), now used by over one hundred ontology projects around the world, and offers examples of domain ontologies that utilize BFO. The book also describes Web Ontology Language (OWL), a common framework for Semantic Web technologies. Throughout, the book provides concrete recommendations for the design and construction of domain ontologies.

Formal Ontology in Information Systems

Formal Ontology in Information Systems
Author: S. Borgo
Publisher: IOS Press
Total Pages: 278
Release: 2018-09-28
Genre: Computers
ISBN: 1614999104
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FOIS is the flagship conference of the International Association for Ontology and its Applications (IAOA). Its interdisciplinary research focus lies at the intersection of philosophical ontology, linguistics, logic, cognitive science, and computer science, as well as in the applications of ontological analysis to conceptual modeling, knowledge engineering, knowledge management, information-systems development, library and information science, scientific research, and semantic technologies in general. This volume presents the proceedings of FOIS 2018, held in Cape Town, South Africa, from 19-21 September. It was the 10th edition and 20th anniversary of the conference series. The volume contains 19 papers grouped into 4 sections: Foundations (7 papers), Agents and Properties (4 papers), Methods and Tools (4 papers), and Applications (4 papers). Regarding the applications of ontologies, a broad spectrum of areas is covered, including in particular biology and medicine, IoT, engineering and linguistics. Formal Ontology in Information Systems - Proceedings of the 10th International Conference (FOIS 2018) will be of interest to researchers from all disciplines with an interest in formal ontology.

Applied Ontology

Applied Ontology
Author: Katherine Munn
Publisher: Walter de Gruyter
Total Pages: 342
Release: 2013-05-02
Genre: Philosophy
ISBN: 3110324865
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Ontology is the philosophical discipline which aims to understand how things in the world are divided into categories and how these categories are related together. This is exactly what information scientists aim for in creating structured, automated representations, called ‘ontologies,’ for managing information in fields such as science, government, industry, and healthcare. Currently, these systems are designed in a variety of different ways, so they cannot share data with one another. They are often idiosyncratically structured, accessible only to those who created them, and unable to serve as inputs for automated reasoning. This volume shows, in a non-technical way and using examples from medicine and biology, how the rigorous application of theories and insights from philosophical ontology can improve the ontologies upon which information management depends.

Narrative Ontology

Narrative Ontology
Author: Axel Hutter
Publisher: John Wiley & Sons
Total Pages: 255
Release: 2021-11-18
Genre: Philosophy
ISBN: 1509543937
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This book is a critical inquiry into three ideas that have been at the heart of philosophical reflection since time immemorial: freedom, God and immortality. Their inherent connection has disappeared from our thought. We barely pay attention to the latter two ideas, and the notion of freedom is used so loosely today that it has become vacuous. Axel Hutter’s book seeks to remind philosophy of its distinct task: only in understanding itself as human self-knowledge that articulates itself in these three ideas will philosophy do justice to its own concept. In developing this line of argument, Hutter finds an ally in Thomas Mann, whose novel Joseph and His Brothers has more to say about freedom, God and immortality than most contemporary philosophy does. Through his reading of Mann’s novel, Hutter explores these three ideas in a distinctive way. He brings out the intimate connection between philosophical self-knowledge and narrative form: Mann’s novel gives expression to the depth of human self-understanding and, thus, demands a genuinely philosophical interpretation. In turn, philosophical concepts are freed from abstractness by resonating with the novel’s motifs and its rich language. Narrative Ontology is both a highly original work of philosophy and a vigorous defence of humanism. It brings together philosophy and literature in a creative way, it will be of great interest to students and scholars in philosophy, literature and the humanities in general.

An Introduction to Ontology Engineering

An Introduction to Ontology Engineering
Author: C. Maria Keet
Publisher:
Total Pages: 344
Release: 2018-11-07
Genre: Computer software
ISBN: 9781848902954
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An Introduction to Ontology Engineering introduces the student to a comprehensive overview of ontology engineering, and offers hands-on experience that illustrate the theory. The topics covered include: logic foundations for ontologies with languages and automated reasoning, developing good ontologies with methods and methodologies, the top-down approach with foundational ontologies, and the bottomup approach to extract content from legacy material, and a selection of advanced topics that includes Ontology-Based Data Access, the interaction between ontologies and natural languages, and advanced modelling with fuzzy and temporal ontologies. Each chapter contains review questions and exercises, and descriptions of two group assignments are provided as well. The textbook is aimed at advanced undergraduate/postgraduate level in computer science and could fi t a semester course in ontology engineering or a 2-week intensive course. Domain experts and philosophers may fi nd a subset of the chapters of interest, or work through the chapters in a different order. Maria Keet is an Associate Professor with the Department of Computer Science, University of Cape Town, South Africa. She received her PhD in Computer Science in 2008 at the KRDB Research Centre, Free University of Bozen-Bolzano, Italy. Her research focus is on knowledge engineering with ontologies and Ontology, and their interaction with natural language and conceptual data modelling, which has resulted in over 100 peer-reviewed publications. She has developed and taught multiple courses on ontology engineering and related courses at various universities since 2009.

Ontology: Laying the Foundations

Ontology: Laying the Foundations
Author: Nicolai Hartmann
Publisher: Walter de Gruyter GmbH & Co KG
Total Pages: 375
Release: 2019-10-21
Genre: Philosophy
ISBN: 3110627353
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It is no exaggeration to say that of the early 20th century German philosophers who claimed to establish a new ontology, former neo-Kantian turned realist Nicolai Hartmann is the only one to have actually followed through. "Ontology: Laying the Foundations" deals with "what is insofar as it is," and its four parts tackle traditional ontological assumptions and prejudices and traditional categories such as substance, thing, individual, whole, object, and phenomenon; a novel redefinition of existence and essence in terms of the ontological factors Dasein and Sosein and their interrelations; an analysis of modes of "givenness" and the ontological embeddedness of cognition in affective transcendent acts; and a discussion of the status of ideal being, including mathematical being, phenomenological essences, logical laws, values, and the interconnections between the ideal and real spheres. Hartmann’s work offers rich resources for those interested in overcoming the human-centeredness of much 20th century philosophy. Hartmann’s work offers rich resources for those interested in overcoming the human-centeredness of much 20th century philosophy.

Ontologies with Python

Ontologies with Python
Author: Lamy Jean-Baptiste
Publisher: Apress
Total Pages: 344
Release: 2021-01-01
Genre: Computers
ISBN: 9781484265512
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Use ontologies in Python, with the Owlready2 module developed for ontology-oriented programming. You will start with an introduction and refresher on Python and OWL ontologies. Then, you will dive straight into how to access, create, and modify ontologies in Python. Next, you will move on to an overview of semantic constructs and class properties followed by how to perform automatic reasoning. You will also learn about annotations, multilingual texts, and how to add Python methods to OWL classes and ontologies. Using medical terminologies as well as direct access to RDF triples is also covered. Python is one of the most used programming languages, especially in the biomedical field, and formal ontologies are also widely used. However, there are limited resources for the use of ontologies in Python. Owlready2, downloaded more than 60,000 times, is a response to this problem, and this book is the first one on the topic of using ontologies with Python. What You Will Learn Use Owlready2 to access and modify OWL ontologies in Python Publish ontologies on dynamic websites Perform automatic reasoning in Python Use well-known ontologies, including DBpedia and Gene Ontology, and terminological resources, such as UMLS (Unified Medical Language System) Integrate Python methods in OWL ontologies Who Is This Book For Beginner to experienced readers from biomedical sciences and artificial intelligence fields would find the book useful.

Ontology and Metaontology

Ontology and Metaontology
Author: Francesco Berto
Publisher: Bloomsbury Publishing
Total Pages: 265
Release: 2015-01-29
Genre: Philosophy
ISBN: 1472573293
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Ontology and Metaontology: A Contemporary Guide is a clear and accessible survey of ontology, focusing on the most recent trends in the discipline. Divided into parts, the first half characterizes metaontology: the discourse on the methodology of ontological inquiry, covering the main concepts, tools, and methods of the discipline, exploring the notions of being and existence, ontological commitment, paraphrase strategies, fictionalist strategies, and other metaontological questions. The second half considers a series of case studies, introducing and familiarizing the reader with concrete examples of the latest research in the field. The basic sub-fields of ontology are covered here via an accessible and captivating exposition: events, properties, universals, abstract objects, possible worlds, material beings, mereology, fictional objects. The guide's modular structure allows for a flexible approach to the subject, making it suitable for both undergraduates and postgraduates looking to better understand and apply the exciting developments and debates taking place in ontology today.

Relational Ontology

Relational Ontology
Author: Chrēstos Giannaras
Publisher:
Total Pages: 148
Release: 2011
Genre: Relation (Philosophy)
ISBN: 9781935317197
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